Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 AC007663.1-201ENST00000438948 1240 ntBASIC16.47■□□□□ 0.23
VPS13CQ709C8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13CQ709C8 YBX1P10-201ENST00000444752 975 ntBASIC16.47■□□□□ 0.23
VPS13CQ709C8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13CQ709C8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 KRT8P20-201ENST00000423953 1409 ntBASIC16.46■□□□□ 0.23
VPS13CQ709C8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 FEM1AP4-201ENST00000443167 1987 ntBASIC16.46■□□□□ 0.23
VPS13CQ709C8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 PCED1CP-201ENST00000419887 785 ntBASIC16.46■□□□□ 0.23
VPS13CQ709C8 AC246785.2-201ENST00000432512 513 ntBASIC16.46■□□□□ 0.23
VPS13CQ709C8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.46■□□□□ 0.23
VPS13CQ709C8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
VPS13CQ709C8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13CQ709C8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.22
VPS13CQ709C8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS13CQ709C8 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.46■□□□□ 0.22
VPS13CQ709C8 SLC25A1P2-201ENST00000430693 912 ntBASIC16.46■□□□□ 0.22
VPS13CQ709C8 AC069148.1-201ENST00000608741 768 ntBASIC16.46■□□□□ 0.22
VPS13CQ709C8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 IER3-202ENST00000376377 1350 ntBASIC16.45■□□□□ 0.22
VPS13CQ709C8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 AC011506.1-201ENST00000474329 610 ntBASIC16.45■□□□□ 0.22
VPS13CQ709C8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13CQ709C8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS13CQ709C8 AC023511.2-201ENST00000618803 211 ntBASIC16.45■□□□□ 0.22
VPS13CQ709C8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 CLEC4GP1-201ENST00000596555 870 ntBASIC16.44■□□□□ 0.22
VPS13CQ709C8 AL691432.3-201ENST00000621860 400 ntBASIC16.44■□□□□ 0.22
VPS13CQ709C8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VPS13CQ709C8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13CQ709C8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms