Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 KRT18P20-201ENST00000548986 1279 ntBASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 AC073111.5-205ENST00000641717 521 ntBASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PPP4R4Q6NUP7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PPP4R4Q6NUP7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 AL138781.2-201ENST00000617896 1843 ntBASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 MIR2861-201ENST00000636310 90 ntBASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PPP4R4Q6NUP7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 AC006970.2-201ENST00000450065 779 ntBASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PPP4R4Q6NUP7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 AC026185.1-201ENST00000445748 174 ntBASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.77■□□□□ 0.6
PPP4R4Q6NUP7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms