Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20■□□□□ 0.79
USP39Q53GS9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 KRT16P1-201ENST00000399124 1418 ntBASIC20■□□□□ 0.79
USP39Q53GS9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20■□□□□ 0.79
USP39Q53GS9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.99■□□□□ 0.79
USP39Q53GS9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
USP39Q53GS9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
USP39Q53GS9 NIFKP9-201ENST00000419265 221 ntBASIC19.99■□□□□ 0.79
USP39Q53GS9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.99■□□□□ 0.79
USP39Q53GS9 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.99■□□□□ 0.79
USP39Q53GS9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.99■□□□□ 0.79
USP39Q53GS9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.99■□□□□ 0.79
USP39Q53GS9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
USP39Q53GS9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
USP39Q53GS9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
USP39Q53GS9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.98■□□□□ 0.79
USP39Q53GS9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.98■□□□□ 0.79
USP39Q53GS9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USP39Q53GS9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP39Q53GS9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
USP39Q53GS9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
USP39Q53GS9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 AL390955.1-201ENST00000428694 934 ntBASIC19.97■□□□□ 0.79
USP39Q53GS9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.97■□□□□ 0.79
USP39Q53GS9 KRT18P57-201ENST00000443599 1254 ntBASIC19.97■□□□□ 0.79
USP39Q53GS9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.97■□□□□ 0.79
USP39Q53GS9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.97■□□□□ 0.79
USP39Q53GS9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.97■□□□□ 0.79
USP39Q53GS9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.97■□□□□ 0.79
USP39Q53GS9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.97■□□□□ 0.79
USP39Q53GS9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.97■□□□□ 0.79
USP39Q53GS9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.97■□□□□ 0.79
USP39Q53GS9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
USP39Q53GS9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP39Q53GS9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.96■□□□□ 0.79
USP39Q53GS9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.96■□□□□ 0.79
USP39Q53GS9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.96■□□□□ 0.79
USP39Q53GS9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.96■□□□□ 0.79
USP39Q53GS9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.96■□□□□ 0.79
USP39Q53GS9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.96■□□□□ 0.79
USP39Q53GS9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.96■□□□□ 0.79
USP39Q53GS9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
USP39Q53GS9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 CYP2D8P-201ENST00000433633 1490 ntBASIC19.96■□□□□ 0.79
USP39Q53GS9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP39Q53GS9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
USP39Q53GS9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP39Q53GS9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms