Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 COX11P1-201ENST00000489116 835 ntBASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 AC141257.4-201ENST00000634557 245 ntBASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 AC136944.6-201ENST00000634818 245 ntBASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 AC092647.4-201ENST00000457211 535 ntBASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC88AQ3V6T2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC88AQ3V6T2 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 AC004980.1-204ENST00000429707 299 ntBASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 AC005229.4-201ENST00000610085 2198 ntBASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 IER3-202ENST00000376377 1350 ntBASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 AC096733.2-201ENST00000609937 1394 ntBASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 AC008622.2-201ENST00000617006 1229 ntBASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC88AQ3V6T2 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 KRT8P10-201ENST00000450021 1447 ntBASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 AC007225.1-201ENST00000566331 1836 ntBASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC88AQ3V6T2 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 CALM3-202ENST00000391918 702 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 MFAP1P1-201ENST00000442257 1255 ntBASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 AC112907.2-201ENST00000448639 330 ntBASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 AC130371.2-201ENST00000619443 611 ntBASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 AL671277.2-201ENST00000458060 996 ntBASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 GPX4-207ENST00000589115 812 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC88AQ3V6T2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC88AQ3V6T2 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.14■■□□□ 1.46
CCDC88AQ3V6T2 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.14■■□□□ 1.46
CCDC88AQ3V6T2 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC88AQ3V6T2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
CCDC88AQ3V6T2 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms