Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.27■□□□□ 0.68
PKNOX1P55347 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.27■□□□□ 0.68
PKNOX1P55347 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 AL355472.2-201ENST00000422958 438 ntBASIC19.27■□□□□ 0.68
PKNOX1P55347 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.27■□□□□ 0.68
PKNOX1P55347 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.27■□□□□ 0.68
PKNOX1P55347 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.27■□□□□ 0.68
PKNOX1P55347 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PKNOX1P55347 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PKNOX1P55347 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PKNOX1P55347 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PKNOX1P55347 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PKNOX1P55347 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
PKNOX1P55347 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.26■□□□□ 0.67
PKNOX1P55347 AC023632.3-201ENST00000521633 145 ntBASIC19.26■□□□□ 0.67
PKNOX1P55347 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.26■□□□□ 0.67
PKNOX1P55347 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PKNOX1P55347 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.26■□□□□ 0.67
PKNOX1P55347 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PKNOX1P55347 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.26■□□□□ 0.67
PKNOX1P55347 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.26■□□□□ 0.67
PKNOX1P55347 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.26■□□□□ 0.67
PKNOX1P55347 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PKNOX1P55347 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PKNOX1P55347 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.26■□□□□ 0.67
PKNOX1P55347 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.26■□□□□ 0.67
PKNOX1P55347 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PKNOX1P55347 AC010980.2-201ENST00000587099 1412 ntBASIC19.25■□□□□ 0.67
PKNOX1P55347 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.25■□□□□ 0.67
PKNOX1P55347 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.25■□□□□ 0.67
PKNOX1P55347 AL512625.2-201ENST00000417533 625 ntBASIC19.25■□□□□ 0.67
PKNOX1P55347 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.25■□□□□ 0.67
PKNOX1P55347 C2orf69P4-201ENST00000565394 541 ntBASIC19.25■□□□□ 0.67
PKNOX1P55347 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.25■□□□□ 0.67
PKNOX1P55347 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
PKNOX1P55347 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PKNOX1P55347 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.25■□□□□ 0.67
PKNOX1P55347 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.25■□□□□ 0.67
PKNOX1P55347 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.25■□□□□ 0.67
PKNOX1P55347 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PKNOX1P55347 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.24■□□□□ 0.67
PKNOX1P55347 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.24■□□□□ 0.67
PKNOX1P55347 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.24■□□□□ 0.67
PKNOX1P55347 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.24■□□□□ 0.67
PKNOX1P55347 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.24■□□□□ 0.67
PKNOX1P55347 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PKNOX1P55347 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.24■□□□□ 0.67
PKNOX1P55347 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
PKNOX1P55347 NEFHP1-201ENST00000412845 2629 ntBASIC19.24■□□□□ 0.67
PKNOX1P55347 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.24■□□□□ 0.67
PKNOX1P55347 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PKNOX1P55347 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PKNOX1P55347 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.24■□□□□ 0.67
PKNOX1P55347 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PKNOX1P55347 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PKNOX1P55347 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PKNOX1P55347 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.23■□□□□ 0.67
PKNOX1P55347 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.23■□□□□ 0.67
PKNOX1P55347 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms