Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
FOXA3P55318 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
FOXA3P55318 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA3P55318 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
FOXA3P55318 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
FOXA3P55318 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MFF-208ENST00000409616 1247 ntTSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 PTPA-214ENST00000423100 988 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA3P55318 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC14.74□□□□□ -0.05
FOXA3P55318 AICDA-202ENST00000537228 667 ntTSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 AC105233.4-201ENST00000642045 216 ntBASIC14.74□□□□□ -0.05
FOXA3P55318 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
FOXA3P55318 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA3P55318 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA3P55318 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.74□□□□□ -0.05
FOXA3P55318 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA3P55318 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA3P55318 GRAMD4P7-201ENST00000578182 1232 ntBASIC14.73□□□□□ -0.05
FOXA3P55318 MIR4466-201ENST00000606121 54 ntBASIC14.73□□□□□ -0.05
FOXA3P55318 AC233992.3-201ENST00000607491 485 ntBASIC14.73□□□□□ -0.05
FOXA3P55318 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA3P55318 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 PCDHB18P-201ENST00000524813 2368 ntBASIC14.73□□□□□ -0.05
FOXA3P55318 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA3P55318 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
FOXA3P55318 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
FOXA3P55318 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA3P55318 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
FOXA3P55318 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 AL133373.2-201ENST00000623187 2828 ntBASIC14.72□□□□□ -0.05
FOXA3P55318 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA3P55318 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA3P55318 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA3P55318 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.72□□□□□ -0.05
FOXA3P55318 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA3P55318 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA3P55318 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA3P55318 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms