Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIG3P49916 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.57■□□□□ 0.88
LIG3P49916 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.57■□□□□ 0.88
LIG3P49916 MCRIP2P1-201ENST00000394346 511 ntBASIC20.57■□□□□ 0.88
LIG3P49916 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LIG3P49916 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.57■□□□□ 0.88
LIG3P49916 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.57■□□□□ 0.88
LIG3P49916 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.57■□□□□ 0.88
LIG3P49916 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LIG3P49916 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
LIG3P49916 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.57■□□□□ 0.88
LIG3P49916 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LIG3P49916 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIG3P49916 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LIG3P49916 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 AC093503.3-201ENST00000624917 2352 ntBASIC20.56■□□□□ 0.88
LIG3P49916 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.56■□□□□ 0.88
LIG3P49916 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 LSM12P1-201ENST00000411836 588 ntBASIC20.56■□□□□ 0.88
LIG3P49916 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.56■□□□□ 0.88
LIG3P49916 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.56■□□□□ 0.88
LIG3P49916 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.56■□□□□ 0.88
LIG3P49916 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
LIG3P49916 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.56■□□□□ 0.88
LIG3P49916 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIG3P49916 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.55■□□□□ 0.88
LIG3P49916 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.55■□□□□ 0.88
LIG3P49916 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.55■□□□□ 0.88
LIG3P49916 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.55■□□□□ 0.88
LIG3P49916 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 KRT17P1-201ENST00000399211 1546 ntBASIC20.55■□□□□ 0.88
LIG3P49916 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LIG3P49916 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.55■□□□□ 0.88
LIG3P49916 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LIG3P49916 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.55■□□□□ 0.88
LIG3P49916 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.55■□□□□ 0.88
LIG3P49916 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LIG3P49916 CYP21A1P-202ENST00000354927 1481 ntBASIC20.55■□□□□ 0.88
LIG3P49916 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LIG3P49916 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIG3P49916 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
LIG3P49916 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIG3P49916 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIG3P49916 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.54■□□□□ 0.88
LIG3P49916 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
LIG3P49916 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.54■□□□□ 0.88
LIG3P49916 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.54■□□□□ 0.88
LIG3P49916 KRT18P6-201ENST00000555540 1265 ntBASIC20.54■□□□□ 0.88
LIG3P49916 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LIG3P49916 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms