Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.48■□□□□ 0.87
PTPN9P43378 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PTPN9P43378 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.48■□□□□ 0.87
PTPN9P43378 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTPN9P43378 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.47■□□□□ 0.87
PTPN9P43378 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.47■□□□□ 0.87
PTPN9P43378 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PTPN9P43378 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN9P43378 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.47■□□□□ 0.87
PTPN9P43378 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
PTPN9P43378 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.47■□□□□ 0.87
PTPN9P43378 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN9P43378 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN9P43378 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 MIR4651-201ENST00000582622 73 ntBASIC20.47■□□□□ 0.87
PTPN9P43378 MTDHP1-201ENST00000605323 784 ntBASIC20.47■□□□□ 0.87
PTPN9P43378 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
PTPN9P43378 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.47■□□□□ 0.87
PTPN9P43378 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTPN9P43378 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.46■□□□□ 0.87
PTPN9P43378 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.46■□□□□ 0.87
PTPN9P43378 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.46■□□□□ 0.87
PTPN9P43378 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PTPN9P43378 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.46■□□□□ 0.87
PTPN9P43378 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.46■□□□□ 0.87
PTPN9P43378 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.46■□□□□ 0.87
PTPN9P43378 AC233263.1-201ENST00000578059 224 ntBASIC20.46■□□□□ 0.87
PTPN9P43378 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PTPN9P43378 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PTPN9P43378 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTPN9P43378 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.87
PTPN9P43378 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
PTPN9P43378 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
PTPN9P43378 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PTPN9P43378 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 PRKY-204ENST00000533551 1019 ntBASIC20.45■□□□□ 0.86
PTPN9P43378 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTPN9P43378 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PTPN9P43378 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
PTPN9P43378 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
PTPN9P43378 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PTPN9P43378 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.44■□□□□ 0.86
PTPN9P43378 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 POU5F1P3-201ENST00000428824 1078 ntBASIC20.44■□□□□ 0.86
PTPN9P43378 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.44■□□□□ 0.86
PTPN9P43378 KRT18P16-201ENST00000510337 1294 ntBASIC20.44■□□□□ 0.86
PTPN9P43378 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.44■□□□□ 0.86
PTPN9P43378 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.44■□□□□ 0.86
PTPN9P43378 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PTPN9P43378 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTPN9P43378 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PTPN9P43378 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PTPN9P43378 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.43■□□□□ 0.86
PTPN9P43378 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PTPN9P43378 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms