Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SHMT2P34897 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHMT2P34897 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.25■□□□□ 0.67
SHMT2P34897 AC124283.5-201ENST00000624661 1809 ntBASIC19.25■□□□□ 0.67
SHMT2P34897 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.25■□□□□ 0.67
SHMT2P34897 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.25■□□□□ 0.67
SHMT2P34897 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.25■□□□□ 0.67
SHMT2P34897 PRKY-204ENST00000533551 1019 ntBASIC19.25■□□□□ 0.67
SHMT2P34897 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.25■□□□□ 0.67
SHMT2P34897 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.25■□□□□ 0.67
SHMT2P34897 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHMT2P34897 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 AL162377.1-201ENST00000618844 1793 ntBASIC19.24■□□□□ 0.67
SHMT2P34897 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.24■□□□□ 0.67
SHMT2P34897 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SHMT2P34897 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.24■□□□□ 0.67
SHMT2P34897 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.24■□□□□ 0.67
SHMT2P34897 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SHMT2P34897 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.24■□□□□ 0.67
SHMT2P34897 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.24■□□□□ 0.67
SHMT2P34897 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SHMT2P34897 MTDHP1-201ENST00000605323 784 ntBASIC19.24■□□□□ 0.67
SHMT2P34897 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHMT2P34897 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHMT2P34897 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.23■□□□□ 0.67
SHMT2P34897 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHMT2P34897 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SHMT2P34897 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.23■□□□□ 0.67
SHMT2P34897 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SHMT2P34897 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHMT2P34897 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHMT2P34897 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.22■□□□□ 0.67
SHMT2P34897 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SHMT2P34897 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.22■□□□□ 0.67
SHMT2P34897 C1QBPP2-201ENST00000528754 825 ntBASIC19.22■□□□□ 0.67
SHMT2P34897 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.22■□□□□ 0.67
SHMT2P34897 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SHMT2P34897 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHMT2P34897 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SHMT2P34897 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SHMT2P34897 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHMT2P34897 PHGDH-210ENST00000641115 1638 ntBASIC19.22■□□□□ 0.67
SHMT2P34897 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SHMT2P34897 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms