Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN6P29350 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN6P29350 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 KRT17P1-201ENST00000399211 1546 ntBASIC18.66■□□□□ 0.58
PTPN6P29350 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PTPN6P29350 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.66■□□□□ 0.58
PTPN6P29350 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
PTPN6P29350 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PTPN6P29350 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTPN6P29350 AL032819.2-201ENST00000624543 2162 ntBASIC18.66■□□□□ 0.58
PTPN6P29350 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
PTPN6P29350 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN6P29350 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN6P29350 LSM12P1-201ENST00000411836 588 ntBASIC18.65■□□□□ 0.58
PTPN6P29350 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN6P29350 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTPN6P29350 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN6P29350 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTPN6P29350 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PTPN6P29350 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PTPN6P29350 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 PHGDH-210ENST00000641115 1638 ntBASIC18.64■□□□□ 0.57
PTPN6P29350 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN6P29350 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN6P29350 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.64■□□□□ 0.57
PTPN6P29350 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN6P29350 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
PTPN6P29350 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN6P29350 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 AC023632.3-201ENST00000521633 145 ntBASIC18.64■□□□□ 0.57
PTPN6P29350 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PTPN6P29350 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.64■□□□□ 0.57
PTPN6P29350 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN6P29350 AC004408.2-201ENST00000623613 2777 ntBASIC18.64■□□□□ 0.57
PTPN6P29350 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN6P29350 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN6P29350 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN6P29350 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN6P29350 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PTPN6P29350 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 AC091874.3-201ENST00000512672 1195 ntBASIC18.63■□□□□ 0.57
PTPN6P29350 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN6P29350 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN6P29350 AL589743.5-201ENST00000616611 1050 ntBASIC18.63■□□□□ 0.57
PTPN6P29350 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN6P29350 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN6P29350 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms