Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.23■■□□□ 1.31
HMGB1P09429 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
HMGB1P09429 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
HMGB1P09429 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
HMGB1P09429 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGB1P09429 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
HMGB1P09429 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
HMGB1P09429 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
HMGB1P09429 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.22■■□□□ 1.31
HMGB1P09429 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.22■■□□□ 1.31
HMGB1P09429 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.22■■□□□ 1.31
HMGB1P09429 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.22■■□□□ 1.31
HMGB1P09429 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.22■■□□□ 1.31
HMGB1P09429 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
HMGB1P09429 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
HMGB1P09429 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.22■■□□□ 1.31
HMGB1P09429 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HMGB1P09429 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGB1P09429 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
HMGB1P09429 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC23.21■■□□□ 1.31
HMGB1P09429 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
HMGB1P09429 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
HMGB1P09429 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.21■■□□□ 1.31
HMGB1P09429 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
HMGB1P09429 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGB1P09429 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
HMGB1P09429 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.21■■□□□ 1.31
HMGB1P09429 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.21■■□□□ 1.31
HMGB1P09429 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.21■■□□□ 1.31
HMGB1P09429 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
HMGB1P09429 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGB1P09429 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
HMGB1P09429 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.31
HMGB1P09429 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
HMGB1P09429 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGB1P09429 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.2■■□□□ 1.3
HMGB1P09429 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
HMGB1P09429 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC23.2■■□□□ 1.3
HMGB1P09429 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
HMGB1P09429 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
HMGB1P09429 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGB1P09429 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGB1P09429 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGB1P09429 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 AP006587.1-201ENST00000534129 1502 ntBASIC23.19■■□□□ 1.3
HMGB1P09429 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23.19■■□□□ 1.3
HMGB1P09429 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
HMGB1P09429 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
HMGB1P09429 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
HMGB1P09429 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGB1P09429 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGB1P09429 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
HMGB1P09429 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGB1P09429 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGB1P09429 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB1P09429 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGB1P09429 POM121L13P-201ENST00000422362 380 ntBASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms