Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
LDB3O75112 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB3O75112 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.52■□□□□ 0.56
LDB3O75112 PRKY-204ENST00000533551 1019 ntBASIC18.52■□□□□ 0.56
LDB3O75112 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB3O75112 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.52■□□□□ 0.56
LDB3O75112 AL023875.1-201ENST00000640777 796 ntBASIC18.52■□□□□ 0.56
LDB3O75112 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.52■□□□□ 0.56
LDB3O75112 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LDB3O75112 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDB3O75112 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.52■□□□□ 0.55
LDB3O75112 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDB3O75112 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LDB3O75112 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
LDB3O75112 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 AC125437.2-201ENST00000625180 2167 ntBASIC18.51■□□□□ 0.55
LDB3O75112 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LDB3O75112 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.51■□□□□ 0.55
LDB3O75112 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.51■□□□□ 0.55
LDB3O75112 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB3O75112 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.51■□□□□ 0.55
LDB3O75112 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.51■□□□□ 0.55
LDB3O75112 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LDB3O75112 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LDB3O75112 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LDB3O75112 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LDB3O75112 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LDB3O75112 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 PRORSD1P-201ENST00000295112 541 ntBASIC18.5■□□□□ 0.55
LDB3O75112 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.5■□□□□ 0.55
LDB3O75112 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB3O75112 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB3O75112 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.5■□□□□ 0.55
LDB3O75112 RN7SL471P-201ENST00000580476 299 ntBASIC18.5■□□□□ 0.55
LDB3O75112 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LDB3O75112 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.5■□□□□ 0.55
LDB3O75112 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LDB3O75112 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB3O75112 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 AP006587.1-201ENST00000534129 1502 ntBASIC18.49■□□□□ 0.55
LDB3O75112 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LDB3O75112 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
LDB3O75112 C1QBPP2-201ENST00000528754 825 ntBASIC18.49■□□□□ 0.55
LDB3O75112 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB3O75112 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LDB3O75112 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.49■□□□□ 0.55
LDB3O75112 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LDB3O75112 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.49■□□□□ 0.55
LDB3O75112 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms