Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 AL512353.2-201ENST00000448759 1962 ntBASIC19.7■□□□□ 0.74
SHOX2O60902 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.7■□□□□ 0.74
SHOX2O60902 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.7■□□□□ 0.74
SHOX2O60902 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.7■□□□□ 0.74
SHOX2O60902 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SHOX2O60902 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHOX2O60902 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHOX2O60902 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
SHOX2O60902 TEX21P-204ENST00000641479 1693 ntBASIC19.69■□□□□ 0.74
SHOX2O60902 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.69■□□□□ 0.74
SHOX2O60902 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.69■□□□□ 0.74
SHOX2O60902 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.69■□□□□ 0.74
SHOX2O60902 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 AP001271.2-201ENST00000624018 1556 ntBASIC19.69■□□□□ 0.74
SHOX2O60902 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 AC008764.6-201ENST00000595909 2069 ntBASIC19.69■□□□□ 0.74
SHOX2O60902 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.69■□□□□ 0.74
SHOX2O60902 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.69■□□□□ 0.74
SHOX2O60902 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHOX2O60902 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.68■□□□□ 0.74
SHOX2O60902 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.68■□□□□ 0.74
SHOX2O60902 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 SERBP1P1-201ENST00000396021 1160 ntBASIC19.68■□□□□ 0.74
SHOX2O60902 AC245052.3-201ENST00000450182 901 ntBASIC19.68■□□□□ 0.74
SHOX2O60902 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.68■□□□□ 0.74
SHOX2O60902 AC133561.4-201ENST00000566112 224 ntBASIC19.68■□□□□ 0.74
SHOX2O60902 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.68■□□□□ 0.74
SHOX2O60902 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.68■□□□□ 0.74
SHOX2O60902 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SHOX2O60902 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SHOX2O60902 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SHOX2O60902 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHOX2O60902 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SHOX2O60902 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHOX2O60902 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHOX2O60902 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHOX2O60902 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.67■□□□□ 0.74
SHOX2O60902 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.67■□□□□ 0.74
SHOX2O60902 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.67■□□□□ 0.74
SHOX2O60902 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHOX2O60902 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHOX2O60902 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SHOX2O60902 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SHOX2O60902 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHOX2O60902 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.67■□□□□ 0.74
SHOX2O60902 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms