Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 DLX3-202ENST00000512495 834 ntTSL 2 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
TRAV4A0A0B4J268 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 AC006970.2-201ENST00000450065 779 ntBASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 OAS3-207ENST00000551007 998 ntTSL 2 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 AL050303.2-201ENST00000619798 666 ntBASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
TRAV4A0A0B4J268 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 BX276092.2-201ENST00000417668 665 ntBASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 RAP2CP1-201ENST00000605103 478 ntBASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 AL121832.2-201ENST00000610979 668 ntBASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAV4A0A0B4J268 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.15□□□□□ -0.14
TRAV4A0A0B4J268 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms