Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.81□□□□□ -1.16
CHMP4AQ9BY43 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CHMP4AQ9BY43 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CHMP4AQ9BY43 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CHMP4AQ9BY43 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.81□□□□□ -1.16
CHMP4AQ9BY43 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 MIR130B-202ENST00000385018 82 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 NPM1P37-201ENST00000403105 874 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 OR2W4P-201ENST00000406496 926 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 SNORA77.2-201ENST00000408571 112 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC116036.1-201ENST00000412199 367 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 OR6K4P-201ENST00000423179 955 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 RPL23AP4-201ENST00000427757 463 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 GAPDHP34-201ENST00000432112 823 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 NPM1P39-201ENST00000449818 867 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC069277.2-201ENST00000454211 432 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 LDHBP2-201ENST00000456969 1005 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC023245.1-201ENST00000468501 517 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC005363.1-201ENST00000530779 351 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC008147.3-201ENST00000548666 354 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 MIR6793-201ENST00000612376 63 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AL391597.1-201ENST00000618707 694 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 AC008627.1-201ENST00000517511 1704 ntBASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CHMP4AQ9BY43 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL034403.1-201ENST00000399414 885 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 VN1R110P-201ENST00000438988 971 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 ZNF619P1-201ENST00000446539 752 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL445466.1-201ENST00000448432 357 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL022319.1-201ENST00000458183 1167 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC094085.1-201ENST00000468914 584 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL158068.1-201ENST00000506116 616 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC079905.1-201ENST00000549280 475 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC090651.1-201ENST00000567865 634 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AL357562.1-201ENST00000624911 609 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 AC016583.1-201ENST00000624221 2431 ntBASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CHMP4AQ9BY43 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CHMP4AQ9BY43 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms