Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 MTND2P12-201ENST00000417560 1252 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AL121878.1-201ENST00000418638 859 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 RPS4XP5-201ENST00000419038 768 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 RPSAP65-201ENST00000429660 595 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 PSMD10P2-201ENST00000432890 672 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AL645936.1-201ENST00000441979 518 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC106822.1-201ENST00000502647 526 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC018797.1-201ENST00000510791 255 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 RNA5SP441-201ENST00000516809 88 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 SEPT10P1-201ENST00000517342 1162 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 SMIM12P1-201ENST00000603004 274 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 uc_338.31-201ENST00000615595 186 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 MIR6721-201ENST00000617181 87 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AL035661.1-201ENST00000620459 1144 ntBASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC112Q8NEF3 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC023632.6-201ENST00000624338 2177 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 HSPD1P7-201ENST00000447985 1686 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC092681.1-201ENST00000297369 291 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 RNA5SP433-201ENST00000364491 114 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 VN1R20P-201ENST00000425215 966 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 RN7SL254P-201ENST00000460609 284 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC008629.2-201ENST00000503783 483 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC137627.1-201ENST00000545761 289 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC002519.2-203ENST00000567043 837 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 GARSP1-201ENST00000570895 719 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 SETP3-201ENST00000581726 813 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AL139124.1-201ENST00000609123 421 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AC010632.3-201ENST00000611377 369 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 AP004607.3-201ENST00000530354 3915 ntBASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC112Q8NEF3 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 MIR188-201ENST00000385034 86 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 RPS14P4-201ENST00000415880 418 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 KCTD9P1-201ENST00000430462 1167 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 RPS7P6-201ENST00000485777 579 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC091874.2-201ENST00000505889 720 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC006512.2-201ENST00000543250 486 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC134669.1-201ENST00000581275 672 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 AC025262.3-201ENST00000623666 360 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 FRG1EP-201ENST00000634469 770 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms