Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 MIR3691-201ENST00000578066 90 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC027334.1-201ENST00000603257 310 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC020765.1-201ENST00000604296 328 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC133644.2-201ENST00000608142 540 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AC009163.6-201ENST00000612367 342 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.72□□□□□ -1.49
CXCL12P48061 AC130448.2-201ENST00000624082 374 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AP001784.1-201ENST00000624107 428 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CXCL12P48061 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 AL034546.1-201ENST00000623740 3693 ntBASIC5.72□□□□□ -1.49
CXCL12P48061 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CXCL12P48061 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.71□□□□□ -1.49
CXCL12P48061 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
CXCL12P48061 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CXCL12P48061 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CXCL12P48061 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
CXCL12P48061 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.71□□□□□ -1.5
CXCL12P48061 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.71□□□□□ -1.5
CXCL12P48061 AL451136.1-201ENST00000435399 325 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC015983.1-201ENST00000441577 373 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 MORF4L1P4-201ENST00000450245 976 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 RPS26P41-201ENST00000450370 284 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.71□□□□□ -1.5
CXCL12P48061 VDAC2P4-201ENST00000452925 711 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC108161.1-201ENST00000461060 402 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 RPL38P3-201ENST00000484463 213 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 RN7SL447P-201ENST00000494711 245 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.71□□□□□ -1.5
CXCL12P48061 RN7SKP288-201ENST00000516227 268 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 AP000676.2-201ENST00000529711 301 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC126177.5-201ENST00000549599 178 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.71□□□□□ -1.5
CXCL12P48061 PRELID3BP3-201ENST00000584963 545 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 AC012616.1-201ENST00000600294 197 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 AC013268.3-201ENST00000262716 2324 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 AP004607.3-201ENST00000530354 3915 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 AC011379.1-201ENST00000508713 3025 ntBASIC5.71□□□□□ -1.5
CXCL12P48061 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.71□□□□□ -1.5
CXCL12P48061 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CXCL12P48061 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.71□□□□□ -1.5
CXCL12P48061 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.7□□□□□ -1.5
CXCL12P48061 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.7□□□□□ -1.5
CXCL12P48061 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.7□□□□□ -1.5
CXCL12P48061 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 MFSD8-219ENST00000641228 2559 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 AC009831.5-201ENST00000624000 3189 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 AC137056.2-201ENST00000624055 1958 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 RNA5SP305-201ENST00000362665 119 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 RNA5SP30-201ENST00000365552 115 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CXCL12P48061 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.7□□□□□ -1.5
CXCL12P48061 OR5W1P-201ENST00000423705 938 ntBASIC5.7□□□□□ -1.5
CXCL12P48061 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.7□□□□□ -1.5
CXCL12P48061 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms