Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 BX284632.1-201ENST00000478218 541 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC7.45□□□□□ -1.22
HOXC9P31274 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC7.45□□□□□ -1.22
HOXC9P31274 AC022164.1-201ENST00000568767 2673 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
HOXC9P31274 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 ZNF840P-201ENST00000504759 1996 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 AL162456.1-201ENST00000634535 2006 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.44□□□□□ -1.22
HOXC9P31274 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.44□□□□□ -1.22
HOXC9P31274 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.44□□□□□ -1.22
HOXC9P31274 RPS3AP38-201ENST00000435889 763 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 CBX1P5-201ENST00000475330 559 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 RPS7P6-201ENST00000485777 579 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 RPL15P21-201ENST00000495592 567 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 RN7SKP99-201ENST00000517028 307 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
HOXC9P31274 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.44□□□□□ -1.22
HOXC9P31274 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.44□□□□□ -1.22
HOXC9P31274 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 DHFRP1-201ENST00000579682 559 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 AC126915.2-201ENST00000610957 190 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 AC068870.2-201ENST00000620635 389 ntBASIC7.44□□□□□ -1.22
HOXC9P31274 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
HOXC9P31274 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
HOXC9P31274 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.44□□□□□ -1.22
HOXC9P31274 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.44□□□□□ -1.22
HOXC9P31274 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
HOXC9P31274 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 AL034546.1-201ENST00000623740 3693 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 RPL23P2-201ENST00000320371 421 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 SNORD1C-201ENST00000363315 78 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 MIR765-201ENST00000390226 114 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AC108075.1-201ENST00000424692 529 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 CRIP1P1-201ENST00000427567 185 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.43□□□□□ -1.22
HOXC9P31274 AC105399.1-202ENST00000447303 205 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC7.43□□□□□ -1.22
HOXC9P31274 COX6B1P2-201ENST00000489624 230 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.43□□□□□ -1.22
HOXC9P31274 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.43□□□□□ -1.22
HOXC9P31274 RBM22P1-201ENST00000578589 1214 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.43□□□□□ -1.22
HOXC9P31274 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.43□□□□□ -1.22
HOXC9P31274 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.43□□□□□ -1.22
HOXC9P31274 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC7.43□□□□□ -1.22
HOXC9P31274 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 AC009779.8-201ENST00000641684 4384 ntBASIC7.43□□□□□ -1.22
HOXC9P31274 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
HOXC9P31274 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 AL117339.4-201ENST00000608335 7063 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 AL139805.2-201ENST00000455305 2433 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
HOXC9P31274 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms