Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF200-201ENST00000396868 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 AC100771.2-201ENST00000525833 1350 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC138915.3-201ENST00000562908 1389 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 DNAJC18-201ENST00000302060 5103 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 AC110926.1-201ENST00000412499 2825 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 OR9K2-201ENST00000305377 1122 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 RNU6-374P-201ENST00000364146 108 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 Y_RNA.474-201ENST00000384341 102 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 MIR551B-201ENST00000384984 96 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RPS24P12-201ENST00000402084 394 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC007435.1-201ENST00000421086 415 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 CDC42P6-201ENST00000421246 576 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC066692.1-201ENST00000421721 457 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 HCG25-217ENST00000422366 702 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 ETF1P3-201ENST00000430422 1160 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 AL731563.1-201ENST00000442202 214 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC019084.1-201ENST00000457337 432 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AP000797.1-201ENST00000478870 387 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RPS4XP17-201ENST00000479057 754 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RAD51AP1P1-201ENST00000484195 1001 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RPL21P42-201ENST00000488408 464 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC090096.1-201ENST00000489168 390 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RN7SL516P-201ENST00000496127 297 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC010368.1-201ENST00000510160 456 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC016559.1-201ENST00000511420 199 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 Y_RNA.693-201ENST00000516641 110 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC126323.4-201ENST00000566935 234 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 IGLJCOR18-201ENST00000584002 424 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 RPL23AP77-201ENST00000588044 463 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.86□□□□□ -1.31
COL8A1P27658 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 AL136139.1-201ENST00000605568 222 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC099676.1-201ENST00000608886 657 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC092807.2-201ENST00000609367 243 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 BX323046.1-201ENST00000610145 535 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 AC005962.2-201ENST00000611427 652 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 5S_rRNA.20-201ENST00000612104 118 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 U2.22-201ENST00000636441 106 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
COL8A1P27658 LINC01616-201ENST00000561816 2280 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 FPR3-202ENST00000595991 2222 ntAPPRIS P1 TSL 4 BASIC6.86□□□□□ -1.31
COL8A1P27658 RBFOX2-207ENST00000414461 1706 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 TRIM49D1-201ENST00000420869 1651 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 TRIM49D2-202ENST00000623787 1651 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 MELK-208ENST00000536987 2125 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 PSG8-203ENST00000404209 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 AHCYL2-208ENST00000474594 2047 ntTSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 AC013470.2-202ENST00000635746 1895 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 CASP7-207ENST00000452490 2271 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC145207.5-201ENST00000582866 2682 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC011369.1-201ENST00000517408 2181 ntTSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 AL353898.3-201ENST00000624679 1755 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 OAS2-207ENST00000620097 2908 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 HSPD1P1-201ENST00000503199 1726 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AGTPBP1-202ENST00000357081 4393 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL8A1P27658 WDR78-203ENST00000371026 3848 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 RNU6-474P-201ENST00000384243 107 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL8A1P27658 IGHV2-5-201ENST00000390597 378 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC022400.3-201ENST00000399449 3810 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 CAPNS1P1-201ENST00000401029 633 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 CYCSP45-201ENST00000402289 315 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 RNA5SP118-201ENST00000410385 109 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AL662791.3-201ENST00000413771 776 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC019050.1-201ENST00000418508 492 ntBASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms