Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL5A3P25940 INTS6P1-201ENST00000504674 2530 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.9□□□□□ -1.3
COL5A3P25940 GSTM5P1-201ENST00000434751 660 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 RPS3AP53-201ENST00000454716 778 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.9□□□□□ -1.3
COL5A3P25940 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL5A3P25940 RN7SKP147-201ENST00000517154 244 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.9□□□□□ -1.3
COL5A3P25940 AC104785.1-201ENST00000603220 588 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 AL133406.3-201ENST00000606817 541 ntBASIC6.9□□□□□ -1.3
COL5A3P25940 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
COL5A3P25940 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL5A3P25940 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL5A3P25940 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL5A3P25940 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL5A3P25940 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.9□□□□□ -1.31
COL5A3P25940 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL5A3P25940 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL5A3P25940 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL5A3P25940 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL5A3P25940 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL5A3P25940 RNU4-2-201ENST00000365668 141 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL5A3P25940 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.9□□□□□ -1.31
COL5A3P25940 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 RPS3AP38-201ENST00000435889 763 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AL596266.1-201ENST00000448132 400 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 RSU1P1-201ENST00000453416 441 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.9□□□□□ -1.31
COL5A3P25940 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL5A3P25940 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.9□□□□□ -1.31
COL5A3P25940 BRD9P1-201ENST00000529855 560 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.9□□□□□ -1.31
COL5A3P25940 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.9□□□□□ -1.31
COL5A3P25940 AC092490.3-201ENST00000545370 572 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 PCNPP1-201ENST00000552501 511 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 OR11H3P-201ENST00000554547 982 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 RN7SL356P-201ENST00000582228 248 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AL627230.1-201ENST00000613077 211 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AL591926.8-201ENST00000616876 211 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AC091905.4-201ENST00000623432 202 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 AC135068.5-201ENST00000624197 983 ntBASIC6.9□□□□□ -1.31
COL5A3P25940 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.9□□□□□ -1.31
COL5A3P25940 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 AC093162.1-201ENST00000419682 124 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.89□□□□□ -1.31
COL5A3P25940 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.89□□□□□ -1.31
COL5A3P25940 AC079080.1-201ENST00000479841 822 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 RN7SL459P-201ENST00000481078 302 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.89□□□□□ -1.31
COL5A3P25940 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
COL5A3P25940 MIR4691-201ENST00000583764 85 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 AL683813.2-201ENST00000605245 502 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 AL078621.3-201ENST00000623707 2042 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
COL5A3P25940 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL5A3P25940 AC104581.5-201ENST00000624171 7141 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 MAPK10-263ENST00000641052 4307 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 AC131649.2-201ENST00000624925 4439 ntBASIC6.89□□□□□ -1.31
COL5A3P25940 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL5A3P25940 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 AC140479.2-201ENST00000421567 3130 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL5A3P25940 AC068138.1-201ENST00000412635 217 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC092017.2-201ENST00000427600 362 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.88□□□□□ -1.31
COL5A3P25940 USP24P1-201ENST00000433802 779 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.88□□□□□ -1.31
COL5A3P25940 SLC25A51P1-201ENST00000468432 871 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC097484.1-201ENST00000471148 389 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 RPL17P2-201ENST00000491913 451 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC008897.1-201ENST00000494006 347 ntBASIC6.88□□□□□ -1.31
COL5A3P25940 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.88□□□□□ -1.31
COL5A3P25940 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms