Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC074375.1-201ENST00000372993 192 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RNA5SP203-201ENST00000410451 136 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC007738.1-201ENST00000413892 348 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 CDH13-203ENST00000431540 831 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RPL3P11-201ENST00000434028 1146 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC096775.1-201ENST00000437724 448 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 TAAR4P-201ENST00000454843 1039 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC133473.1-201ENST00000455173 299 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AL591866.1-201ENST00000456162 401 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 SNORD125-201ENST00000459538 96 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RN7SL836P-201ENST00000476140 296 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC083795.1-201ENST00000491760 320 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RPL5P3-201ENST00000493817 889 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RPS6P4-201ENST00000494693 758 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 PGBD4P4-201ENST00000509673 613 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC016559.2-201ENST00000510759 359 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC021146.3-201ENST00000511911 260 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC114801.1-201ENST00000512633 297 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC021146.10-201ENST00000515628 706 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 SEPT10P1-201ENST00000517342 1162 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 C8orf87-201ENST00000521906 588 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC008514.1-201ENST00000521965 602 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC091175.1-201ENST00000522168 572 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC027020.1-202ENST00000557839 429 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC040958.1-201ENST00000561102 201 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 CD24P2-201ENST00000565486 219 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 CDH13-207ENST00000565636 810 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RN7SL371P-201ENST00000578099 267 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 MIR378C-201ENST00000578683 81 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 RN7SL3-201ENST00000610674 299 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC015908.5-201ENST00000623289 343 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC002094.5-201ENST00000623773 629 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC008626.2-201ENST00000624425 248 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 AC073488.9-201ENST00000631601 754 ntBASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CHKB-CPT1BH3BT56 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 SLC9B1P3-201ENST00000452667 1334 ntBASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 IL37-201ENST00000263326 772 ntAPPRIS P4 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 IL37-202ENST00000311328 652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 IL37-205ENST00000353225 652 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 MIR448-201ENST00000362131 111 ntBASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 RPS3AP5-201ENST00000389400 821 ntBASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CHKB-CPT1BH3BT56 RNA5SP91-201ENST00000390902 119 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms