Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.24□□□□□ -1.25
COL18A1P39060 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL18A1P39060 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL18A1P39060 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 AL035419.1-201ENST00000397037 564 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC013442.1-201ENST00000397347 228 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 GSTM5P1-201ENST00000434751 660 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 RSU1P1-201ENST00000453416 441 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.23□□□□□ -1.25
COL18A1P39060 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC7.23□□□□□ -1.25
COL18A1P39060 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC7.23□□□□□ -1.25
COL18A1P39060 AC021106.1-201ENST00000509020 1058 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC7.23□□□□□ -1.25
COL18A1P39060 RN7SKP147-201ENST00000517154 244 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 PMS2P3-207ENST00000529061 717 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 MIR378J-201ENST00000611988 109 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AL627230.1-201ENST00000613077 211 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AL591926.8-201ENST00000616876 211 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC7.23□□□□□ -1.25
COL18A1P39060 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC7.23□□□□□ -1.25
COL18A1P39060 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 AL034546.1-201ENST00000623740 3693 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL18A1P39060 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 DNAJA1P4-201ENST00000406473 1166 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC068138.1-201ENST00000412635 217 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC093162.1-201ENST00000419682 124 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.23□□□□□ -1.25
COL18A1P39060 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 TMEM183AP1-205ENST00000432739 290 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 GSTA7P-201ENST00000438425 448 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AL451063.1-201ENST00000450164 1133 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 SLC25A51P1-201ENST00000468432 871 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 RN7SL346P-201ENST00000491561 294 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC7.23□□□□□ -1.25
COL18A1P39060 OR5AM1P-201ENST00000532136 1032 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC7.23□□□□□ -1.25
COL18A1P39060 AC134349.2-201ENST00000535136 910 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AP002373.2-201ENST00000541631 1060 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 OR11H3P-201ENST00000554547 982 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 AC135068.5-201ENST00000624197 983 ntBASIC7.23□□□□□ -1.25
COL18A1P39060 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL18A1P39060 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
COL18A1P39060 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.22□□□□□ -1.25
COL18A1P39060 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC7.22□□□□□ -1.25
COL18A1P39060 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC7.22□□□□□ -1.25
COL18A1P39060 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7.22□□□□□ -1.25
COL18A1P39060 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
COL18A1P39060 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.22□□□□□ -1.25
COL18A1P39060 AL772161.1-201ENST00000439130 476 ntBASIC7.22□□□□□ -1.25
COL18A1P39060 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC7.22□□□□□ -1.25
COL18A1P39060 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.22□□□□□ -1.25
COL18A1P39060 AP004607.2-201ENST00000533949 322 ntBASIC7.22□□□□□ -1.25
COL18A1P39060 AC063949.1-201ENST00000552900 865 ntBASIC7.22□□□□□ -1.25
COL18A1P39060 AL133406.3-201ENST00000606817 541 ntBASIC7.22□□□□□ -1.25
COL18A1P39060 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
COL18A1P39060 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC7.22□□□□□ -1.25
COL18A1P39060 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL18A1P39060 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
COL18A1P39060 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
COL18A1P39060 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.22□□□□□ -1.25
COL18A1P39060 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL18A1P39060 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
COL18A1P39060 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL18A1P39060 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms