Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC5.62□□□□□ -1.51
COL6A3P12111 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A3P12111 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
COL6A3P12111 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
COL6A3P12111 SNORA9-201ENST00000384215 133 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 MYL6P5-201ENST00000412707 459 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 IGLV3-24-201ENST00000517477 197 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 AL445567.2-201ENST00000618935 498 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 AC105235.1-201ENST00000623208 1816 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 AC107980.1-201ENST00000558671 3355 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A3P12111 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A3P12111 HLCS-202ENST00000399120 6466 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.61□□□□□ -1.51
COL6A3P12111 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC5.61□□□□□ -1.51
COL6A3P12111 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A3P12111 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 AL136455.1-201ENST00000441083 1240 ntBASIC5.61□□□□□ -1.51
COL6A3P12111 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.61□□□□□ -1.51
COL6A3P12111 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.61□□□□□ -1.51
COL6A3P12111 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.61□□□□□ -1.51
COL6A3P12111 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.61□□□□□ -1.51
COL6A3P12111 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A3P12111 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A3P12111 SIPA1L2-203ENST00000366630 6690 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 REV3L-202ENST00000368802 10701 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.6□□□□□ -1.51
COL6A3P12111 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 ASPA-201ENST00000263080 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 IGKV7-3-201ENST00000357453 298 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 RPS3AP25-201ENST00000411660 793 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A3P12111 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A3P12111 TXNP2-201ENST00000443918 295 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 Z95152.1-201ENST00000453556 656 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A3P12111 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 ZNF469-201ENST00000437464 13203 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 AC005224.3-201ENST00000584683 2140 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 MIR1204-201ENST00000408388 67 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A3P12111 AC005154.2-201ENST00000438110 379 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A3P12111 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 AC005725.1-201ENST00000577346 2607 ntBASIC5.6□□□□□ -1.51
COL6A3P12111 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 SCN5A-210ENST00000455624 7170 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A3P12111 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
COL6A3P12111 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 AC100757.1-201ENST00000616872 1835 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A3P12111 MIR2117-201ENST00000516780 80 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 MORF4L1P3-201ENST00000525966 950 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.59□□□□□ -1.51
COL6A3P12111 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A3P12111 ST3GAL1-207ENST00000521180 6951 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 AC007996.1-201ENST00000620414 2821 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL6A3P12111 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL6A3P12111 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms