Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL022311.1-201ENST00000623726 19416 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC004076.2-201ENST00000620532 3323 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 YWHAZP6-201ENST00000399764 738 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL359885.1-201ENST00000415786 903 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL445466.1-201ENST00000448432 357 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 HMGB1P7-201ENST00000450921 612 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC006539.1-201ENST00000481419 501 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AGGF1P3-201ENST00000493675 1213 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 RNA5SP441-201ENST00000516809 88 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC136777.2-201ENST00000522979 358 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC121758.1-202ENST00000556917 658 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC007346.1-201ENST00000569208 867 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 TXNP4-201ENST00000575018 310 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL513327.3-201ENST00000602618 469 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AL357140.4-201ENST00000636827 412 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 MTCO1P15-201ENST00000529569 1526 ntBASIC5.87□□□□□ -1.47
VPS39Q96JC1 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS39Q96JC1 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS39Q96JC1 AC133552.1-201ENST00000569988 4007 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC011933.2-201ENST00000578539 2790 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 RN7SKP78-201ENST00000364711 318 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL672167.2-201ENST00000377164 879 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 RPS4XP5-201ENST00000419038 768 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 RPSAP65-201ENST00000429660 595 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC108479.1-201ENST00000431142 427 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC004129.2-201ENST00000457229 287 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 PRMT5P1-201ENST00000514351 598 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 GARSP1-201ENST00000570895 719 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC068768.2-201ENST00000602352 343 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL021918.2-201ENST00000613415 194 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC048341.3-201ENST00000619323 491 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC074140.1-201ENST00000621617 208 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 AL109924.4-201ENST00000623089 670 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 AC073488.3-201ENST00000631611 778 ntBASIC5.86□□□□□ -1.47
VPS39Q96JC1 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.86□□□□□ -1.47
VPS39Q96JC1 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS39Q96JC1 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms