Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 GPLD1-201ENST00000230036 3489 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC8.4□□□□□ -1.06
COL9A1P20849 MAPK10-382ENST00000642023 2369 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 STEAP3-AS1-201ENST00000454260 3218 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 SLC17A2-202ENST00000360488 2270 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 GAPDHP24-201ENST00000328713 983 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 OR5D18-201ENST00000333976 991 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
COL9A1P20849 RNU6-216P-201ENST00000363282 104 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 RNU6-282P-201ENST00000365357 103 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC8.4□□□□□ -1.06
COL9A1P20849 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
COL9A1P20849 HEPACAM2-202ENST00000394468 2148 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 FGFR1OP2P1-201ENST00000395943 500 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 RPL32P23-201ENST00000397237 405 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC003080.1-201ENST00000413552 767 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 Z97634.1-203ENST00000435229 471 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC8.4□□□□□ -1.06
COL9A1P20849 DNAJC19P8-201ENST00000452887 259 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 RPL18AP17-201ENST00000455326 198 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AL109809.3-201ENST00000456875 246 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 RN7SL58P-201ENST00000473445 294 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC8.4□□□□□ -1.06
COL9A1P20849 POU5F1P7-201ENST00000508759 541 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC8.4□□□□□ -1.06
COL9A1P20849 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC8.4□□□□□ -1.06
COL9A1P20849 PTK2-241ENST00000522950 548 ntTSL 4 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC084033.3-201ENST00000551421 451 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 HMGN1P30-201ENST00000589286 268 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC011497.2-201ENST00000600255 639 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 MIR98-201ENST00000606724 119 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC8.4□□□□□ -1.06
COL9A1P20849 AL359091.2-201ENST00000609303 556 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC8.4□□□□□ -1.06
COL9A1P20849 AC090617.10-201ENST00000624308 134 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 AC007603.3-201ENST00000636915 979 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 CEP68-205ENST00000537589 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 ZNF700-201ENST00000254321 2882 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 DDX53-201ENST00000327968 3629 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
COL9A1P20849 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 ZFY-204ENST00000449237 3464 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC8.4□□□□□ -1.07
COL9A1P20849 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC8.4□□□□□ -1.07
COL9A1P20849 TRIO-201ENST00000344135 4065 ntTSL 2 BASIC8.4□□□□□ -1.07
COL9A1P20849 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
COL9A1P20849 AC006378.2-201ENST00000623178 2476 ntBASIC8.4□□□□□ -1.07
COL9A1P20849 CEBPZOS-204ENST00000402297 3158 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.07
COL9A1P20849 TXNRD1-208ENST00000525566 3836 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
COL9A1P20849 SYNJ1-206ENST00000433931 4852 ntAPPRIS P4 TSL 1 (best) BASIC8.4□□□□□ -1.07
COL9A1P20849 TNFRSF10D-201ENST00000312584 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
COL9A1P20849 TPP1-215ENST00000533371 3536 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
COL9A1P20849 BDNF-216ENST00000532997 3930 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 MSH4-201ENST00000263187 3266 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 ZNF300-201ENST00000274599 3268 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 AC099792.1-202ENST00000635290 2012 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 GTF2H2-201ENST00000274400 4336 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
COL9A1P20849 LGSN-201ENST00000370657 1949 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 EIF4ENIF1-201ENST00000330125 3544 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 SNX19P2-201ENST00000452841 2971 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 STX16-206ENST00000371132 4552 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 AL445231.1-201ENST00000445523 1814 ntTSL 2 BASIC8.39□□□□□ -1.07
COL9A1P20849 ABHD4-203ENST00000428304 3366 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 VPS11-206ENST00000614944 3388 ntTSL 2 BASIC8.39□□□□□ -1.07
COL9A1P20849 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 TMSB4XP2-201ENST00000335179 210 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 MIR595-201ENST00000384905 96 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 MTATP6P18-201ENST00000417994 673 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 RPL34P3-201ENST00000421454 338 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC073335.1-201ENST00000427776 363 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC8.39□□□□□ -1.07
COL9A1P20849 ATP5JP1-201ENST00000431631 322 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
COL9A1P20849 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC8.39□□□□□ -1.07
COL9A1P20849 AC104306.1-201ENST00000449702 371 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 RPS24P6-201ENST00000452670 400 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 MED28P8-201ENST00000454831 521 ntBASIC8.39□□□□□ -1.07
COL9A1P20849 AC091685.2-201ENST00000454924 864 ntBASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms