Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
LIG3P49916 AL121977.1-201ENST00000401636 979 ntBASIC7.26□□□□□ -1.25
LIG3P49916 SOD1P1-201ENST00000407803 440 ntBASIC7.26□□□□□ -1.25
LIG3P49916 RN7SKP85-201ENST00000411349 318 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AL161742.1-201ENST00000418154 584 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC006960.1-201ENST00000419980 153 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC006065.1-201ENST00000422539 802 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC019178.2-201ENST00000423595 505 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC092646.1-201ENST00000427142 901 ntBASIC7.26□□□□□ -1.25
LIG3P49916 ANXA2P2-201ENST00000435128 1020 ntBASIC7.26□□□□□ -1.25
LIG3P49916 HSD52-202ENST00000436225 772 ntTSL 3 BASIC7.26□□□□□ -1.25
LIG3P49916 AL138787.1-202ENST00000437804 898 ntBASIC7.26□□□□□ -1.25
LIG3P49916 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC7.26□□□□□ -1.25
LIG3P49916 BZW1P1-201ENST00000454901 1240 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC117395.2-201ENST00000463122 1128 ntBASIC7.26□□□□□ -1.25
LIG3P49916 CBX5P1-201ENST00000468470 561 ntBASIC7.26□□□□□ -1.25
LIG3P49916 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 AC073648.3-201ENST00000504939 925 ntBASIC7.26□□□□□ -1.25
LIG3P49916 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC7.26□□□□□ -1.25
LIG3P49916 RPL12P22-201ENST00000519073 490 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AP004607.5-201ENST00000532034 217 ntBASIC7.26□□□□□ -1.25
LIG3P49916 OR9G2P-201ENST00000533326 880 ntBASIC7.26□□□□□ -1.25
LIG3P49916 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 AL049870.4-201ENST00000555741 486 ntBASIC7.26□□□□□ -1.25
LIG3P49916 NDUFA3P4-201ENST00000560814 250 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 AC093909.6-201ENST00000624757 775 ntBASIC7.26□□□□□ -1.25
LIG3P49916 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 JAML-213ENST00000640745 951 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
LIG3P49916 AC005618.1-201ENST00000606901 3148 ntBASIC7.26□□□□□ -1.25
LIG3P49916 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
LIG3P49916 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 AL356473.1-201ENST00000406203 1408 ntBASIC7.26□□□□□ -1.25
LIG3P49916 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
LIG3P49916 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.26□□□□□ -1.25
LIG3P49916 TATDN2P3-201ENST00000452855 3665 ntBASIC7.25□□□□□ -1.25
LIG3P49916 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 AC020978.6-201ENST00000571197 3177 ntBASIC7.25□□□□□ -1.25
LIG3P49916 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 RNA5SP27-201ENST00000363839 119 ntBASIC7.25□□□□□ -1.25
LIG3P49916 RNA5SP302-201ENST00000364896 100 ntBASIC7.25□□□□□ -1.25
LIG3P49916 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 OR8V1P-201ENST00000395193 873 ntBASIC7.25□□□□□ -1.25
LIG3P49916 ATP5HP3-201ENST00000396994 486 ntBASIC7.25□□□□□ -1.25
LIG3P49916 RSL24D1P4-201ENST00000400938 484 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AL049697.3-201ENST00000406493 982 ntBASIC7.25□□□□□ -1.25
LIG3P49916 RNU4ATAC2P-201ENST00000408674 126 ntBASIC7.25□□□□□ -1.25
LIG3P49916 ERMN-202ENST00000409216 746 ntTSL 4 BASIC7.25□□□□□ -1.25
LIG3P49916 AL139135.1-201ENST00000412675 209 ntBASIC7.25□□□□□ -1.25
LIG3P49916 HMGB3P31-201ENST00000413333 595 ntBASIC7.25□□□□□ -1.25
LIG3P49916 NRIR-202ENST00000414795 506 ntTSL 3 BASIC7.25□□□□□ -1.25
LIG3P49916 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC7.25□□□□□ -1.25
LIG3P49916 RPL29P7-201ENST00000440227 457 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC097499.1-201ENST00000444277 208 ntBASIC7.25□□□□□ -1.25
LIG3P49916 RPL36AP55-201ENST00000454114 305 ntBASIC7.25□□□□□ -1.25
LIG3P49916 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 AC066616.1-201ENST00000486795 413 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC090058.1-201ENST00000498788 435 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms