Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.54□□□□□ -1.2
HOXC9P31274 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 AC007342.5-201ENST00000571340 2142 ntBASIC7.54□□□□□ -1.2
HOXC9P31274 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HOXC9P31274 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.53□□□□□ -1.2
HOXC9P31274 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 AC137056.2-201ENST00000624055 1958 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.53□□□□□ -1.2
HOXC9P31274 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
HOXC9P31274 MIR223-201ENST00000385204 110 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 OR52B5P-201ENST00000435337 951 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 OSTCP1-201ENST00000455507 450 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC7.53□□□□□ -1.2
HOXC9P31274 USP9YP2-201ENST00000504503 1000 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 USP9YP1-201ENST00000513521 1002 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 OR10G5P-201ENST00000532733 358 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
HOXC9P31274 AC004825.1-201ENST00000555068 586 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 AL445222.1-201ENST00000607259 628 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 OR52B5P-202ENST00000641118 1110 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 MRRFP1-201ENST00000435941 1675 ntBASIC7.53□□□□□ -1.2
HOXC9P31274 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
HOXC9P31274 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
HOXC9P31274 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.53□□□□□ -1.2
HOXC9P31274 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
HOXC9P31274 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
HOXC9P31274 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.2
HOXC9P31274 PWAR1-201ENST00000624188 2414 ntBASIC7.52□□□□□ -1.2
HOXC9P31274 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.52□□□□□ -1.21
HOXC9P31274 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.52□□□□□ -1.21
HOXC9P31274 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 U3.2-201ENST00000362981 210 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 RNA5SP335-201ENST00000363817 110 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.52□□□□□ -1.21
HOXC9P31274 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.52□□□□□ -1.21
HOXC9P31274 OTX2P1-201ENST00000450956 354 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 AL355032.1-201ENST00000472981 438 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 RN7SL808P-201ENST00000496066 299 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 RPEP1-201ENST00000504507 658 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 AC078899.1-201ENST00000521432 1185 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC7.52□□□□□ -1.21
HOXC9P31274 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 AL049779.2-201ENST00000553847 315 ntBASIC7.52□□□□□ -1.21
HOXC9P31274 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
HOXC9P31274 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.21
HOXC9P31274 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.51□□□□□ -1.21
HOXC9P31274 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.51□□□□□ -1.21
HOXC9P31274 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 AL645927.1-201ENST00000396783 406 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 AL121835.1-201ENST00000404250 354 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.51□□□□□ -1.21
HOXC9P31274 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC7.51□□□□□ -1.21
HOXC9P31274 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC7.51□□□□□ -1.21
HOXC9P31274 RPL7P39-201ENST00000481157 744 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.51□□□□□ -1.21
HOXC9P31274 AC231760.1-201ENST00000498002 260 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.51□□□□□ -1.21
HOXC9P31274 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.51□□□□□ -1.21
HOXC9P31274 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.51□□□□□ -1.21
HOXC9P31274 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.51□□□□□ -1.21
HOXC9P31274 MIR4311-201ENST00000580794 100 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 AC006115.2-201ENST00000596823 202 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.51□□□□□ -1.21
HOXC9P31274 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC7.51□□□□□ -1.21
HOXC9P31274 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.51□□□□□ -1.21
HOXC9P31274 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms