Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC010886.1-201ENST00000437380 2869 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 OR2A20P-201ENST00000479887 2913 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 GZMA-201ENST00000274306 894 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 PRAC1-201ENST00000290294 386 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SNORD46-201ENST00000364043 104 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RNA5SP79-201ENST00000365193 109 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RNU1-16P-201ENST00000365477 164 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RNU6-348P-201ENST00000384386 107 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RNA5SP297-201ENST00000391029 113 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 HMGB3P1-201ENST00000393368 573 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 PRELID1P2-201ENST00000407805 396 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RPL21P108-201ENST00000413857 481 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 FCF1P2-201ENST00000415284 583 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 GNAI2P2-201ENST00000417003 916 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ANKRD54P1-201ENST00000433115 471 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC091862.1-201ENST00000438016 1100 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL512593.1-201ENST00000444758 779 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RPL5P10-201ENST00000445207 894 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC108463.1-201ENST00000450258 347 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL358876.1-201ENST00000453364 1075 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL133244.1-201ENST00000456007 258 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RN7SL332P-201ENST00000482163 254 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC091544.1-201ENST00000484702 348 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 OR4G11P-201ENST00000492842 939 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC023886.1-201ENST00000506057 685 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC109481.1-201ENST00000509173 282 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 PGAM4P2-201ENST00000512491 721 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ADI1P2-201ENST00000514945 429 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AP003385.2-201ENST00000524910 973 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SLC2A13P1-201ENST00000531560 322 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 CR383656.6-201ENST00000550518 394 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 APEX1-214ENST00000557054 888 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC092133.1-201ENST00000565828 719 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ANKRD20A19P-203ENST00000602724 295 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC005084.1-201ENST00000605160 304 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RN7SL760P-201ENST00000607344 270 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC243830.3-201ENST00000616810 376 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC234782.5-201ENST00000617723 324 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC095031.1-201ENST00000623685 672 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC099667.1-201ENST00000624222 469 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 MTND4P16-201ENST00000466108 1367 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 TPTE2P2-201ENST00000403471 1466 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 TEX21P-201ENST00000447107 1476 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 WDR95P-201ENST00000425638 1542 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AC102941.1-201ENST00000567616 1537 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 RLIMP2-201ENST00000427891 1563 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 Z99129.4-201ENST00000624649 2435 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 HNRNPA1P54-201ENST00000411857 9714 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms