Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
H3F3AP84243 TMSB4XP2-201ENST00000335179 210 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 MIR133A2-201ENST00000347538 102 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 DEFA9P-201ENST00000433042 285 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 EIF5AP4-201ENST00000441206 465 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 AC023141.8-201ENST00000442554 208 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 HMGN1P2-201ENST00000445197 310 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 AC090602.1-201ENST00000469695 252 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.23□□□□□ -1.57
H3F3AP84243 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.23□□□□□ -1.57
H3F3AP84243 RN7SL57P-201ENST00000493687 290 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.23□□□□□ -1.57
H3F3AP84243 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.23□□□□□ -1.57
H3F3AP84243 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 AC067773.1-201ENST00000603284 1094 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 AC129915.3-201ENST00000634128 948 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 OR11H2-202ENST00000641517 1085 ntBASIC5.23□□□□□ -1.57
H3F3AP84243 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
H3F3AP84243 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
H3F3AP84243 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
H3F3AP84243 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
H3F3AP84243 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
H3F3AP84243 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
H3F3AP84243 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 SAMM50P1-201ENST00000455403 1399 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 OR7E25P-201ENST00000344844 931 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 RN7SKP78-201ENST00000364711 318 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 OR7E101P-201ENST00000400428 513 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 SSR1P1-201ENST00000407630 814 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 RN7SKP29-201ENST00000410957 272 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 RN7SKP17-201ENST00000411242 351 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC115283.1-201ENST00000427353 400 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 CDY8P-201ENST00000428380 1279 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 RPL12P16-201ENST00000431098 498 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC015983.1-201ENST00000441577 373 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 CDY20P-201ENST00000447528 1279 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 AC079080.1-201ENST00000479841 822 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 RNA5SP271-201ENST00000516700 88 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 HMGN2P36-201ENST00000529541 409 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC068305.2-201ENST00000550567 1205 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.22□□□□□ -1.57
H3F3AP84243 COX6CP7-201ENST00000597056 208 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 AC125494.2-201ENST00000602431 657 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 AC016745.2-201ENST00000608834 3443 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
H3F3AP84243 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 FBXL21-201ENST00000297158 1305 ntBASIC5.22□□□□□ -1.57
H3F3AP84243 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.22□□□□□ -1.57
H3F3AP84243 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.22□□□□□ -1.57
H3F3AP84243 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.21□□□□□ -1.57
H3F3AP84243 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.21□□□□□ -1.57
H3F3AP84243 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
H3F3AP84243 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
H3F3AP84243 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms