Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.78□□□□□ -1.32
COL4A1P02462 AL365220.1-201ENST00000432923 399 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 PA2G4P6-201ENST00000438325 1197 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 Z80107.2-201ENST00000445127 392 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 AC105399.1-202ENST00000447303 205 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 AL389915.2-201ENST00000454576 441 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.78□□□□□ -1.32
COL4A1P02462 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 RNA5SP373-201ENST00000517271 95 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 OR5D15P-201ENST00000531671 942 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 AC137627.1-201ENST00000545761 289 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.78□□□□□ -1.32
COL4A1P02462 HIRAP1-201ENST00000605318 787 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 MIR6748-201ENST00000610433 71 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 AC090607.5-201ENST00000615692 224 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.78□□□□□ -1.32
COL4A1P02462 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC6.78□□□□□ -1.32
COL4A1P02462 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 AC011493.1-201ENST00000596753 1632 ntBASIC6.78□□□□□ -1.32
COL4A1P02462 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.78□□□□□ -1.32
COL4A1P02462 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL4A1P02462 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.32
COL4A1P02462 RNU1-149P-201ENST00000390870 161 ntBASIC6.77□□□□□ -1.32
COL4A1P02462 RN7SKP279-201ENST00000411383 298 ntBASIC6.77□□□□□ -1.32
COL4A1P02462 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.77□□□□□ -1.32
COL4A1P02462 RPL17P2-201ENST00000491913 451 ntBASIC6.77□□□□□ -1.32
COL4A1P02462 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.77□□□□□ -1.32
COL4A1P02462 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.77□□□□□ -1.32
COL4A1P02462 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.77□□□□□ -1.32
COL4A1P02462 AL445528.2-201ENST00000620582 470 ntBASIC6.77□□□□□ -1.32
COL4A1P02462 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
COL4A1P02462 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.77□□□□□ -1.33
COL4A1P02462 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC6.77□□□□□ -1.33
COL4A1P02462 AL139805.2-201ENST00000455305 2433 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL4A1P02462 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 OR55B1P-203ENST00000641518 2602 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
COL4A1P02462 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.77□□□□□ -1.33
COL4A1P02462 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.77□□□□□ -1.33
COL4A1P02462 RNU1-146P-201ENST00000364015 165 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.77□□□□□ -1.33
COL4A1P02462 SNORA56-201ENST00000383966 129 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 Y_RNA.625-201ENST00000411256 107 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.77□□□□□ -1.33
COL4A1P02462 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.77□□□□□ -1.33
COL4A1P02462 RSU1P1-201ENST00000453416 441 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.77□□□□□ -1.33
COL4A1P02462 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.77□□□□□ -1.33
COL4A1P02462 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.77□□□□□ -1.33
COL4A1P02462 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC6.77□□□□□ -1.33
COL4A1P02462 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.77□□□□□ -1.33
COL4A1P02462 AC087763.1-201ENST00000603391 286 ntBASIC6.77□□□□□ -1.33
COL4A1P02462 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.77□□□□□ -1.33
COL4A1P02462 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC6.77□□□□□ -1.33
COL4A1P02462 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL4A1P02462 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
COL4A1P02462 ABCA11P-202ENST00000504019 2110 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.76□□□□□ -1.33
COL4A1P02462 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 AC013268.3-201ENST00000262716 2324 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
COL4A1P02462 AL121886.1-201ENST00000358609 435 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 MIR765-201ENST00000390226 114 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 AL121977.1-201ENST00000401636 979 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.76□□□□□ -1.33
COL4A1P02462 EI24P4-201ENST00000423683 1078 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 NANOGP9-201ENST00000439890 892 ntBASIC6.76□□□□□ -1.33
COL4A1P02462 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.76□□□□□ -1.33
COL4A1P02462 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL4A1P02462 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms