Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 RNA5SP339-201ENST00000390987 122 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 CEACAMP7-201ENST00000444105 496 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 ACA64.4-201ENST00000459070 127 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 RN7SL165P-201ENST00000477476 291 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 RNU6ATAC24P-201ENST00000516811 135 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AP002505.2-201ENST00000623585 696 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AP000550.3-201ENST00000637734 379 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SCAPERQ9BY12 THAP12P9-201ENST00000503971 2360 ntBASIC8.67□□□□□ -1.02
SCAPERQ9BY12 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 NIFKP3-201ENST00000417799 865 ntBASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AC108075.1-201ENST00000424692 529 ntBASIC8.66□□□□□ -1.02
SCAPERQ9BY12 HMGB1P32-201ENST00000425971 565 ntBASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 EIF4EBP2P1-201ENST00000450009 343 ntBASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 OR4A40P-201ENST00000533878 948 ntBASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SCAPERQ9BY12 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC092017.2-201ENST00000427600 362 ntBASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC004129.2-201ENST00000457229 287 ntBASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 OR51A1P-201ENST00000511110 946 ntBASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC027334.1-201ENST00000603257 310 ntBASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 AC112243.1-201ENST00000623949 3851 ntBASIC8.65□□□□□ -1.02
SCAPERQ9BY12 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SCAPERQ9BY12 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 MFSD8-219ENST00000641228 2559 ntBASIC8.65□□□□□ -1.03
SCAPERQ9BY12 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.03
SCAPERQ9BY12 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 PA2G4P6-201ENST00000438325 1197 ntBASIC8.64□□□□□ -1.03
SCAPERQ9BY12 RPL21P133-201ENST00000443666 476 ntBASIC8.64□□□□□ -1.03
SCAPERQ9BY12 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 AL445528.2-201ENST00000620582 470 ntBASIC8.64□□□□□ -1.03
SCAPERQ9BY12 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
SCAPERQ9BY12 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms