Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NKX3-1Q99801 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
NKX3-1Q99801 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NKX3-1Q99801 AC239868.2-201ENST00000564237 4527 ntBASIC5.21□□□□□ -1.57
NKX3-1Q99801 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.21□□□□□ -1.57
NKX3-1Q99801 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 RN7SKP187-201ENST00000365536 330 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AL121977.1-201ENST00000401636 979 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 NACAP7-201ENST00000407371 609 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 USP9YP19-201ENST00000412165 485 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 MRPS21P2-201ENST00000424704 264 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AL138899.2-201ENST00000439139 499 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 PCNPP2-201ENST00000441651 455 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC007383.1-201ENST00000445875 636 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC104339.1-201ENST00000465478 348 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 DEFB109A-201ENST00000482450 265 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 RPL34P33-201ENST00000486062 334 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 CYP4F27P-201ENST00000514557 494 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 RNA5SP441-201ENST00000516809 88 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AP000619.2-201ENST00000546014 969 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AP001357.1-201ENST00000586304 1053 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC005229.3-201ENST00000603438 323 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 RPSAP75-201ENST00000605848 301 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AL683826.1-201ENST00000624104 627 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC073592.6-201ENST00000624271 415 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
NKX3-1Q99801 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC022417.1-201ENST00000624768 1303 ntBASIC5.21□□□□□ -1.58
NKX3-1Q99801 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NKX3-1Q99801 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 THAP12P8-201ENST00000447914 2115 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 OR10R3P-201ENST00000361688 942 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 RNU1-65P-201ENST00000363919 148 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 RNU11-201ENST00000387069 134 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NKX3-1Q99801 VIM2P-201ENST00000402383 1294 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 VN1R20P-201ENST00000425215 966 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 RPL12P16-201ENST00000431098 498 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 PSMD10P2-201ENST00000432890 672 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC094019.1-201ENST00000434678 472 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 ARMC4P1-201ENST00000438905 707 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 HIGD1AP16-201ENST00000450986 258 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 H3F3AP5-201ENST00000475267 429 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 TRBV5-2-201ENST00000489095 273 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 AC112484.3-201ENST00000505910 329 ntBASIC5.2□□□□□ -1.58
NKX3-1Q99801 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.2□□□□□ -1.58
NKX3-1Q99801 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms