Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC9.41□□□□□ -0.9
CUX1P39880 BMPR1APS2-201ENST00000527904 1012 ntBASIC9.41□□□□□ -0.9
CUX1P39880 AC100827.5-201ENST00000615883 426 ntBASIC9.41□□□□□ -0.9
CUX1P39880 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 AC011493.1-201ENST00000596753 1632 ntBASIC9.41□□□□□ -0.9
CUX1P39880 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
CUX1P39880 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
CUX1P39880 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 AL031651.1-201ENST00000615357 1438 ntBASIC9.41□□□□□ -0.9
CUX1P39880 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC9.41□□□□□ -0.9
CUX1P39880 HSPA8P18-201ENST00000439846 1928 ntBASIC9.41□□□□□ -0.9
CUX1P39880 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
CUX1P39880 AP002991.2-201ENST00000623807 2801 ntBASIC9.41□□□□□ -0.9
CUX1P39880 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 SNORD8-201ENST00000363915 110 ntBASIC9.41□□□□□ -0.9
CUX1P39880 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC9.41□□□□□ -0.9
CUX1P39880 OR4K12P-201ENST00000406538 961 ntBASIC9.41□□□□□ -0.9
CUX1P39880 RPL23AP18-201ENST00000416139 468 ntBASIC9.41□□□□□ -0.9
CUX1P39880 RBMY2QP-201ENST00000429799 1147 ntBASIC9.41□□□□□ -0.9
CUX1P39880 SNRPCP2-201ENST00000504370 475 ntBASIC9.41□□□□□ -0.9
CUX1P39880 AC013701.1-201ENST00000522657 465 ntBASIC9.41□□□□□ -0.9
CUX1P39880 AL121594.2-201ENST00000541658 472 ntBASIC9.41□□□□□ -0.9
CUX1P39880 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC9.41□□□□□ -0.9
CUX1P39880 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC9.41□□□□□ -0.9
CUX1P39880 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC9.41□□□□□ -0.9
CUX1P39880 ELOCP28-201ENST00000590044 317 ntBASIC9.41□□□□□ -0.9
CUX1P39880 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC9.41□□□□□ -0.9
CUX1P39880 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC9.41□□□□□ -0.9
CUX1P39880 uc_338.18-201ENST00000615451 175 ntBASIC9.41□□□□□ -0.9
CUX1P39880 WWOX-217ENST00000620008 450 ntTSL 2 BASIC9.41□□□□□ -0.9
CUX1P39880 ERG-202ENST00000398897 4651 ntTSL 5 BASIC9.4□□□□□ -0.9
CUX1P39880 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC9.4□□□□□ -0.9
CUX1P39880 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 AC009831.5-201ENST00000624000 3189 ntBASIC9.4□□□□□ -0.9
CUX1P39880 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
CUX1P39880 SRSF1P1-201ENST00000424058 520 ntBASIC9.4□□□□□ -0.91
CUX1P39880 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC9.4□□□□□ -0.91
CUX1P39880 RPS23P2-201ENST00000463671 415 ntBASIC9.4□□□□□ -0.91
CUX1P39880 RPS18P6-201ENST00000476880 458 ntBASIC9.4□□□□□ -0.91
CUX1P39880 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC9.4□□□□□ -0.91
CUX1P39880 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC9.4□□□□□ -0.91
CUX1P39880 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC9.4□□□□□ -0.91
CUX1P39880 AP002799.1-201ENST00000623552 423 ntBASIC9.4□□□□□ -0.91
CUX1P39880 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
CUX1P39880 DPY19L1P1-201ENST00000417811 2594 ntBASIC9.4□□□□□ -0.91
CUX1P39880 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
CUX1P39880 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
CUX1P39880 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC9.39□□□□□ -0.91
CUX1P39880 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
CUX1P39880 HMGB1P32-201ENST00000425971 565 ntBASIC9.39□□□□□ -0.91
CUX1P39880 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC9.39□□□□□ -0.91
CUX1P39880 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC9.39□□□□□ -0.91
CUX1P39880 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC9.39□□□□□ -0.91
CUX1P39880 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC9.39□□□□□ -0.91
CUX1P39880 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC9.39□□□□□ -0.91
CUX1P39880 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC9.39□□□□□ -0.91
CUX1P39880 AC087385.3-201ENST00000620477 187 ntBASIC9.39□□□□□ -0.91
CUX1P39880 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC9.39□□□□□ -0.91
CUX1P39880 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC9.39□□□□□ -0.91
CUX1P39880 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC9.39□□□□□ -0.91
CUX1P39880 DPY19L2P2-203ENST00000435536 1858 ntBASIC9.39□□□□□ -0.91
CUX1P39880 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC9.39□□□□□ -0.91
CUX1P39880 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
CUX1P39880 LPP-208ENST00000448637 5835 ntTSL 5 BASIC9.38□□□□□ -0.91
CUX1P39880 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 TEK-202ENST00000406359 3935 ntTSL 2 BASIC9.38□□□□□ -0.91
CUX1P39880 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 RNU4-2-201ENST00000365668 141 ntBASIC9.38□□□□□ -0.91
CUX1P39880 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC9.38□□□□□ -0.91
CUX1P39880 RNA5SP87-201ENST00000384155 118 ntBASIC9.38□□□□□ -0.91
CUX1P39880 RNU1-149P-201ENST00000390870 161 ntBASIC9.38□□□□□ -0.91
CUX1P39880 RNU6ATAC7P-201ENST00000408111 127 ntBASIC9.38□□□□□ -0.91
CUX1P39880 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC9.38□□□□□ -0.91
CUX1P39880 AC007161.1-204ENST00000423039 460 ntBASIC9.38□□□□□ -0.91
CUX1P39880 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC9.38□□□□□ -0.91
CUX1P39880 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC9.38□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms