Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.35□□□□□ -1.23
COL18A1P39060 AC137768.1-201ENST00000549998 553 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 AGGF1P7-201ENST00000562369 913 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC7.35□□□□□ -1.23
COL18A1P39060 ELOCP28-201ENST00000590044 317 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7.35□□□□□ -1.23
COL18A1P39060 AC090607.5-201ENST00000615692 224 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 MFSD4BP1-201ENST00000513330 1552 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
COL18A1P39060 AL360271.1-201ENST00000395679 510 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC7.34□□□□□ -1.23
COL18A1P39060 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.34□□□□□ -1.23
COL18A1P39060 AC083982.1-201ENST00000485679 344 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 RPS7P6-201ENST00000485777 579 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 HMGB1P44-201ENST00000508597 572 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 RN7SKP99-201ENST00000517028 307 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.34□□□□□ -1.23
COL18A1P39060 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.34□□□□□ -1.23
COL18A1P39060 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC7.34□□□□□ -1.23
COL18A1P39060 MIR7703-201ENST00000620784 77 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
COL18A1P39060 AC114947.2-201ENST00000565748 2125 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 AC131971.1-201ENST00000332881 1482 ntBASIC7.34□□□□□ -1.23
COL18A1P39060 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
COL18A1P39060 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.34□□□□□ -1.23
COL18A1P39060 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL18A1P39060 DOCK11P1-201ENST00000553480 5932 ntBASIC7.34□□□□□ -1.24
COL18A1P39060 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL18A1P39060 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL18A1P39060 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 RNU6ATAC7P-201ENST00000408111 127 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 AL360081.1-201ENST00000428299 555 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 AL672167.3-201ENST00000465951 960 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 RPS17P5-201ENST00000498293 408 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.33□□□□□ -1.24
COL18A1P39060 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 RNU1-146P-201ENST00000364015 165 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 RN7SKP6-201ENST00000364795 319 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 RNU6ATAC21P-201ENST00000408656 126 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.33□□□□□ -1.24
COL18A1P39060 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.33□□□□□ -1.24
COL18A1P39060 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 RNA5SP373-201ENST00000517271 95 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 HMGB1P40-201ENST00000525121 540 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 AC007346.2-201ENST00000564816 892 ntBASIC7.33□□□□□ -1.24
COL18A1P39060 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC7.33□□□□□ -1.24
COL18A1P39060 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC7.33□□□□□ -1.24
COL18A1P39060 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL18A1P39060 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 AC083899.1-201ENST00000454465 3819 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 PANDAR-201ENST00000629595 1506 ntBASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms