Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
SMARCA1P28370 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC7.01□□□□□ -1.29
SMARCA1P28370 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SMARCA1P28370 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.01□□□□□ -1.29
SMARCA1P28370 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SMARCA1P28370 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.01□□□□□ -1.29
SMARCA1P28370 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
SMARCA1P28370 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7□□□□□ -1.29
SMARCA1P28370 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 RNA5SP514-201ENST00000363717 111 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AC004386.1-201ENST00000393214 761 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AL360271.1-201ENST00000395679 510 ntBASIC7□□□□□ -1.29
SMARCA1P28370 MYL6P5-201ENST00000412707 459 ntBASIC7□□□□□ -1.29
SMARCA1P28370 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 AC015977.1-201ENST00000418887 292 ntBASIC7□□□□□ -1.29
SMARCA1P28370 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 AC245884.2-201ENST00000426257 404 ntBASIC7□□□□□ -1.29
SMARCA1P28370 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC7□□□□□ -1.29
SMARCA1P28370 AC110602.1-201ENST00000437414 318 ntBASIC7□□□□□ -1.29
SMARCA1P28370 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 AL158053.1-201ENST00000441503 453 ntBASIC7□□□□□ -1.29
SMARCA1P28370 PCNPP2-201ENST00000441651 455 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 AC023245.1-201ENST00000468501 517 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AC083795.1-201ENST00000491760 320 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 RNU6-760P-201ENST00000516078 97 ntBASIC7□□□□□ -1.29
SMARCA1P28370 RN7SKP157-201ENST00000516174 282 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AP003396.4-201ENST00000527574 265 ntBASIC7□□□□□ -1.29
SMARCA1P28370 OR4A42P-201ENST00000531397 938 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7□□□□□ -1.29
SMARCA1P28370 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC7□□□□□ -1.29
SMARCA1P28370 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 FAM60CP-201ENST00000591086 664 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AP003117.1-201ENST00000602771 554 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 AC004890.3-201ENST00000605566 1095 ntBASIC7□□□□□ -1.29
SMARCA1P28370 OR7M1P-201ENST00000608946 533 ntBASIC7□□□□□ -1.29
SMARCA1P28370 AC026367.3-201ENST00000619032 590 ntBASIC7□□□□□ -1.29
SMARCA1P28370 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 AC022306.3-201ENST00000619930 550 ntBASIC7□□□□□ -1.29
SMARCA1P28370 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 AL136228.1-201ENST00000622221 319 ntBASIC7□□□□□ -1.29
SMARCA1P28370 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC7□□□□□ -1.29
SMARCA1P28370 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7□□□□□ -1.29
SMARCA1P28370 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7□□□□□ -1.29
SMARCA1P28370 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SMARCA1P28370 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.99□□□□□ -1.29
SMARCA1P28370 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.99□□□□□ -1.29
SMARCA1P28370 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.99□□□□□ -1.29
SMARCA1P28370 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.99□□□□□ -1.29
SMARCA1P28370 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
SMARCA1P28370 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.99□□□□□ -1.29
SMARCA1P28370 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
SMARCA1P28370 SNORA77.2-201ENST00000408571 112 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 RNA5SP251-201ENST00000410614 137 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.99□□□□□ -1.29
SMARCA1P28370 MRPS33P4-201ENST00000434892 317 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AL590399.4-201ENST00000436561 601 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.99□□□□□ -1.29
SMARCA1P28370 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 MTND5P8-201ENST00000449817 1083 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 GEMIN2P1-201ENST00000454246 752 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC098847.1-201ENST00000473094 348 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.99□□□□□ -1.29
SMARCA1P28370 PPP1R11P1-201ENST00000486095 376 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.99□□□□□ -1.29
SMARCA1P28370 SCARNA18.1-201ENST00000516330 83 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC005363.1-201ENST00000530779 351 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms