Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL161756.3-201ENST00000641216 2071 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SELENOWP1-201ENST00000322792 252 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 MTND4LP21-201ENST00000415303 295 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 KIF4CP-201ENST00000422742 1279 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 KCTD9P1-201ENST00000430462 1167 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL445928.1-201ENST00000435545 222 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 RPS3AP38-201ENST00000435889 763 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL590399.4-201ENST00000436561 601 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 RPS12P17-201ENST00000438591 377 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 DNAJA1P5-201ENST00000440278 943 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 BMS1P10-201ENST00000443754 1120 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL603882.1-201ENST00000463059 681 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 NDUFA5P5-201ENST00000468361 342 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 TRBV5-2-201ENST00000489095 273 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 IGKV2-19-201ENST00000518132 283 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC079905.1-201ENST00000549280 475 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 RPA2P1-201ENST00000556557 721 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC005244.1-201ENST00000582566 339 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL138895.2-201ENST00000603019 178 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL355974.3-201ENST00000617383 467 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC245014.3-201ENST00000618589 347 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 MIR6861-201ENST00000618657 64 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC024884.1-201ENST00000620583 399 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AL592429.1-201ENST00000403909 1473 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 AC005224.3-201ENST00000584683 2140 ntBASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 SNORA11.3-201ENST00000408471 128 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 AL354890.1-201ENST00000413730 346 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 RPS4XP5-201ENST00000419038 768 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 AC245884.2-201ENST00000426257 404 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 RPL34P27-201ENST00000428810 349 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 CFL1P4-201ENST00000451536 498 ntBASIC5.61□□□□□ -1.51
ATG4BQ9Y4P1 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms