Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC9.45□□□□□ -0.9
CUX1P39880 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
CUX1P39880 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 AC090114.3-201ENST00000479267 829 ntBASIC9.45□□□□□ -0.9
CUX1P39880 RN7SL97P-201ENST00000486780 299 ntBASIC9.45□□□□□ -0.9
CUX1P39880 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC9.45□□□□□ -0.9
CUX1P39880 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC9.45□□□□□ -0.9
CUX1P39880 HIGD1AP5-201ENST00000529959 259 ntBASIC9.45□□□□□ -0.9
CUX1P39880 AC011840.5-201ENST00000582125 771 ntBASIC9.45□□□□□ -0.9
CUX1P39880 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC9.45□□□□□ -0.9
CUX1P39880 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 AC091953.3-201ENST00000623220 236 ntBASIC9.45□□□□□ -0.9
CUX1P39880 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC9.45□□□□□ -0.9
CUX1P39880 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CUX1P39880 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC9.45□□□□□ -0.9
CUX1P39880 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC9.44□□□□□ -0.9
CUX1P39880 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 ZNF101P1-201ENST00000435701 1720 ntBASIC9.44□□□□□ -0.9
CUX1P39880 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
CUX1P39880 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC9.44□□□□□ -0.9
CUX1P39880 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC9.44□□□□□ -0.9
CUX1P39880 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
CUX1P39880 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
CUX1P39880 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC9.44□□□□□ -0.9
CUX1P39880 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
CUX1P39880 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC9.44□□□□□ -0.9
CUX1P39880 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC9.44□□□□□ -0.9
CUX1P39880 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
CUX1P39880 HNRNPCP1-201ENST00000556181 766 ntBASIC9.44□□□□□ -0.9
CUX1P39880 MIR4646-201ENST00000580775 63 ntBASIC9.44□□□□□ -0.9
CUX1P39880 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC9.44□□□□□ -0.9
CUX1P39880 AC069307.1-201ENST00000602820 447 ntBASIC9.44□□□□□ -0.9
CUX1P39880 AC090607.5-201ENST00000615692 224 ntBASIC9.44□□□□□ -0.9
CUX1P39880 HNRNPA1P54-201ENST00000411857 9714 ntBASIC9.44□□□□□ -0.9
CUX1P39880 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
CUX1P39880 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC9.43□□□□□ -0.9
CUX1P39880 Z82209.2-201ENST00000623410 2012 ntBASIC9.43□□□□□ -0.9
CUX1P39880 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC9.43□□□□□ -0.9
CUX1P39880 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
CUX1P39880 DNAJB5P1-201ENST00000454004 806 ntBASIC9.43□□□□□ -0.9
CUX1P39880 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC9.43□□□□□ -0.9
CUX1P39880 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 AP001922.4-201ENST00000526967 290 ntBASIC9.43□□□□□ -0.9
CUX1P39880 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC9.43□□□□□ -0.9
CUX1P39880 IGLCOR22-2-201ENST00000605398 313 ntBASIC9.43□□□□□ -0.9
CUX1P39880 AC004836.1-201ENST00000623032 634 ntBASIC9.43□□□□□ -0.9
CUX1P39880 CYP4F35P-202ENST00000636121 390 ntBASIC9.43□□□□□ -0.9
CUX1P39880 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC9.43□□□□□ -0.9
CUX1P39880 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 MFSD8-216ENST00000641147 4009 ntBASIC9.43□□□□□ -0.9
CUX1P39880 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
CUX1P39880 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
CUX1P39880 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
CUX1P39880 RNA5SP305-201ENST00000362665 119 ntBASIC9.42□□□□□ -0.9
CUX1P39880 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC9.42□□□□□ -0.9
CUX1P39880 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC9.42□□□□□ -0.9
CUX1P39880 AK3P5-201ENST00000432033 519 ntBASIC9.42□□□□□ -0.9
CUX1P39880 AC105399.1-202ENST00000447303 205 ntBASIC9.42□□□□□ -0.9
CUX1P39880 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC9.42□□□□□ -0.9
CUX1P39880 MAL2-208ENST00000523307 556 ntTSL 4 BASIC9.42□□□□□ -0.9
CUX1P39880 OR5AZ1P-201ENST00000527448 943 ntBASIC9.42□□□□□ -0.9
CUX1P39880 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC9.42□□□□□ -0.9
CUX1P39880 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC9.42□□□□□ -0.9
CUX1P39880 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC9.42□□□□□ -0.9
CUX1P39880 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC9.42□□□□□ -0.9
CUX1P39880 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC9.42□□□□□ -0.9
CUX1P39880 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC9.42□□□□□ -0.9
CUX1P39880 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 AC114876.1-201ENST00000490962 1366 ntBASIC9.42□□□□□ -0.9
CUX1P39880 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
CUX1P39880 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
CUX1P39880 AC131971.1-201ENST00000332881 1482 ntBASIC9.42□□□□□ -0.9
CUX1P39880 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC9.42□□□□□ -0.9
CUX1P39880 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
CUX1P39880 RNVU1-6-201ENST00000364688 164 ntBASIC9.41□□□□□ -0.9
CUX1P39880 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC9.41□□□□□ -0.9
CUX1P39880 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC9.41□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms