Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC023762.1-201ENST00000603280 584 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC073333.2-201ENST00000603589 769 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 Z99289.3-201ENST00000605586 594 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.13□□□□□ -1.27
COL6A1P12109 AL352984.2-201ENST00000611153 546 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC122108.2-201ENST00000611946 526 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 AL512652.1-201ENST00000619006 500 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC131009.3-201ENST00000621809 287 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 OFD1P17-201ENST00000437639 3018 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 UG0898H09-202ENST00000623646 7040 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
COL6A1P12109 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
COL6A1P12109 RNU4-39P-201ENST00000362455 127 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 SNORA58B-201ENST00000364259 136 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AL391361.1-201ENST00000405580 489 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 RN7SKP293-201ENST00000411389 296 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 RAB9AP4-201ENST00000415230 609 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC130360.1-201ENST00000425489 1117 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 MORF4L1P7-201ENST00000426038 703 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 AL355355.1-201ENST00000442900 793 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AP000281.1-201ENST00000444036 316 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 ACA64.1-201ENST00000459171 127 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 WDR78-207ENST00000488333 613 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 PRELID3BP6-201ENST00000503839 571 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC7.12□□□□□ -1.27
COL6A1P12109 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 RN7SKP98-201ENST00000517070 156 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC130365.2-201ENST00000525882 1201 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AP003396.4-201ENST00000527574 265 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 RPA2P1-201ENST00000556557 721 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC106052.1-201ENST00000608029 497 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 AP000864.1-201ENST00000609424 650 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC100847.1-201ENST00000611316 481 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC004477.3-201ENST00000614061 590 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC245014.3-201ENST00000618589 347 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 5S_rRNA.28-201ENST00000638107 119 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 AC034111.1-201ENST00000562143 3770 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 NCOA4P2-201ENST00000340589 1813 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 AC015689.2-201ENST00000528172 1738 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.12□□□□□ -1.27
COL6A1P12109 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 NSF-206ENST00000575068 2667 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL6A1P12109 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC7.12□□□□□ -1.27
COL6A1P12109 AC016251.2-201ENST00000623393 3089 ntBASIC7.12□□□□□ -1.27
COL6A1P12109 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 AL136984.1-201ENST00000607611 1893 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms