Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 SNORD16-201ENST00000362803 99 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 RNU1-84P-201ENST00000365447 164 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 RNU6-452P-201ENST00000384406 107 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 ARSFP1-201ENST00000398758 477 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 RNU4-64P-201ENST00000410795 131 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 GNG5P5-201ENST00000420444 220 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC099336.2-201ENST00000422457 254 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 NPM1P23-201ENST00000440193 849 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 RPL6P30-201ENST00000443382 862 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC7.6□□□□□ -1.19
HMGB1P09429 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 AL034369.1-201ENST00000453808 477 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC099560.2-201ENST00000457554 255 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 RPS4XP17-201ENST00000479057 754 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 RN7SL413P-201ENST00000482700 297 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC7.6□□□□□ -1.19
HMGB1P09429 RPL17P2-201ENST00000491913 451 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 SETP12-201ENST00000514068 805 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 COX6B1P4-201ENST00000519826 484 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC7.6□□□□□ -1.19
HMGB1P09429 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 MIR548Y-201ENST00000582739 110 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 AC123786.2-201ENST00000603459 275 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 AP001885.1-201ENST00000621658 558 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 AC004836.1-201ENST00000623032 634 ntBASIC7.6□□□□□ -1.19
HMGB1P09429 METTL8-218ENST00000638989 876 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.6□□□□□ -1.19
HMGB1P09429 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
HMGB1P09429 AKAP17BP-201ENST00000431706 2719 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC7.59□□□□□ -1.19
HMGB1P09429 SOCS5P3-201ENST00000425115 1576 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.59□□□□□ -1.19
HMGB1P09429 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
HMGB1P09429 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
HMGB1P09429 RNA5SP478-201ENST00000364657 115 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 RNU6-185P-201ENST00000384421 107 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 VIM2P-201ENST00000402383 1294 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AL353692.2-201ENST00000407054 335 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 RN7SKP221-201ENST00000410420 301 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 MRPS21P5-201ENST00000417885 231 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.59□□□□□ -1.19
HMGB1P09429 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 AL157884.1-201ENST00000424561 454 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 GTF3AP6-201ENST00000432585 986 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC7.59□□□□□ -1.19
HMGB1P09429 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC7.59□□□□□ -1.19
HMGB1P09429 SYT14P1-201ENST00000481459 721 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AC074386.1-206ENST00000487102 761 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 AC018645.1-201ENST00000505003 109 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 ASB8-207ENST00000536953 923 ntTSL 2 BASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms