Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 MYH2-202ENST00000397183 6078 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 GJA6P-201ENST00000415117 1042 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC112187.1-201ENST00000455837 479 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 IGKV2-23-201ENST00000518729 323 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
PRKDCP78527 FHL2-207ENST00000409177 4881 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
PRKDCP78527 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 RPSAP35-201ENST00000413753 818 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 FAM96AP1-201ENST00000430879 482 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 CCDC11P1-201ENST00000503137 1162 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 CACNA1E-206ENST00000367573 7067 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 SLC12A1-203ENST00000396577 4708 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
PRKDCP78527 AL078621.3-201ENST00000623707 2042 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 CASC19-260ENST00000641828 2001 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
PRKDCP78527 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 CENPIP1-201ENST00000425713 902 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC3.94□□□□□ -1.78
PRKDCP78527 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC3.94□□□□□ -1.78
PRKDCP78527 PPIAP21-201ENST00000464473 501 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC133555.2-201ENST00000550213 292 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 AC084824.1-201ENST00000550917 1005 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC3.94□□□□□ -1.78
PRKDCP78527 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC013488.1-201ENST00000526618 1838 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 ATP8A1-202ENST00000381668 8270 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 RN7SKP126-201ENST00000411143 300 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC3.94□□□□□ -1.78
PRKDCP78527 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC3.94□□□□□ -1.78
PRKDCP78527 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 RPL7AP52-201ENST00000458096 790 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 AL603882.1-201ENST00000463059 681 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 AC063943.1-201ENST00000465434 453 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 SAP18P1-201ENST00000512058 390 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 IGLV3-24-201ENST00000517477 197 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
PRKDCP78527 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC006338.2-201ENST00000616864 791 ntBASIC3.94□□□□□ -1.78
PRKDCP78527 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.94□□□□□ -1.78
PRKDCP78527 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.94□□□□□ -1.78
PRKDCP78527 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
PRKDCP78527 NRP1-206ENST00000374867 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PRKDCP78527 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms