Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
BDNFP23560 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
BDNFP23560 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
BDNFP23560 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BDNFP23560 OLMALINC-203ENST00000641087 3779 ntBASIC6.58□□□□□ -1.36
BDNFP23560 HSPD1P9-201ENST00000420325 1636 ntBASIC6.58□□□□□ -1.36
BDNFP23560 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 AL354854.1-201ENST00000455940 1363 ntBASIC6.57□□□□□ -1.36
BDNFP23560 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 COX6B1P3-201ENST00000312310 260 ntBASIC6.57□□□□□ -1.36
BDNFP23560 SNORA51.9-201ENST00000384295 124 ntBASIC6.57□□□□□ -1.36
BDNFP23560 MIR433-201ENST00000384837 93 ntBASIC6.57□□□□□ -1.36
BDNFP23560 RN7SKP240-201ENST00000410583 375 ntBASIC6.57□□□□□ -1.36
BDNFP23560 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.57□□□□□ -1.36
BDNFP23560 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.57□□□□□ -1.36
BDNFP23560 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 RPSAP39-201ENST00000467439 883 ntBASIC6.57□□□□□ -1.36
BDNFP23560 RBBP4P1-201ENST00000502424 1276 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.57□□□□□ -1.36
BDNFP23560 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 AC022826.1-201ENST00000519383 805 ntBASIC6.57□□□□□ -1.36
BDNFP23560 IGKV3D-25-201ENST00000519599 235 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.57□□□□□ -1.36
BDNFP23560 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.57□□□□□ -1.36
BDNFP23560 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.57□□□□□ -1.36
BDNFP23560 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 CD24P2-201ENST00000565486 219 ntBASIC6.57□□□□□ -1.36
BDNFP23560 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 AC027229.1-201ENST00000583887 253 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 AC079315.1-201ENST00000602952 623 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC084373.1-201ENST00000603311 235 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AL512652.1-201ENST00000619006 500 ntBASIC6.57□□□□□ -1.36
BDNFP23560 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.57□□□□□ -1.36
BDNFP23560 AL355377.1-201ENST00000621125 1653 ntBASIC6.57□□□□□ -1.36
BDNFP23560 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 PARP4P2-201ENST00000446672 3326 ntBASIC6.57□□□□□ -1.36
BDNFP23560 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 AC093225.1-201ENST00000506867 1408 ntBASIC6.57□□□□□ -1.36
BDNFP23560 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
BDNFP23560 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BDNFP23560 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.57□□□□□ -1.36
BDNFP23560 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.56□□□□□ -1.36
BDNFP23560 AC007159.1-201ENST00000566529 4706 ntBASIC6.56□□□□□ -1.36
BDNFP23560 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
BDNFP23560 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.56□□□□□ -1.36
BDNFP23560 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.56□□□□□ -1.36
BDNFP23560 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
BDNFP23560 SNORA43.1-201ENST00000364863 140 ntBASIC6.56□□□□□ -1.36
BDNFP23560 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.56□□□□□ -1.36
BDNFP23560 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
BDNFP23560 AL034403.1-201ENST00000399414 885 ntBASIC6.56□□□□□ -1.36
BDNFP23560 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.56□□□□□ -1.36
BDNFP23560 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BDNFP23560 AC130360.1-201ENST00000425489 1117 ntBASIC6.56□□□□□ -1.36
BDNFP23560 OR3D1P-201ENST00000438288 955 ntBASIC6.56□□□□□ -1.36
BDNFP23560 AL353662.1-201ENST00000439099 327 ntBASIC6.56□□□□□ -1.36
BDNFP23560 AC009237.1-201ENST00000442127 744 ntBASIC6.56□□□□□ -1.36
BDNFP23560 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.56□□□□□ -1.36
BDNFP23560 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.56□□□□□ -1.36
BDNFP23560 GAPDHP23-201ENST00000444823 993 ntBASIC6.56□□□□□ -1.36
BDNFP23560 AC097463.1-201ENST00000447288 481 ntBASIC6.56□□□□□ -1.36
BDNFP23560 RNU6-775P-201ENST00000459318 96 ntBASIC6.56□□□□□ -1.36
BDNFP23560 RPL7AP10-201ENST00000481016 791 ntBASIC6.56□□□□□ -1.36
BDNFP23560 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.56□□□□□ -1.36
BDNFP23560 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
BDNFP23560 AC090958.1-201ENST00000511122 351 ntBASIC6.56□□□□□ -1.36
BDNFP23560 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.56□□□□□ -1.36
BDNFP23560 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms