Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL121594.2-201ENST00000541658 472 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 AL161670.1-201ENST00000554348 137 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC8.47□□□□□ -1.05
COL9A1P20849 AC015818.5-201ENST00000578659 356 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 MIR4742-201ENST00000581069 85 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 MIR4271-201ENST00000582451 67 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 AL953862.2-201ENST00000603089 820 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AL359999.1-201ENST00000604513 294 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 MIR6745-201ENST00000612694 127 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AP003068.4-201ENST00000623192 802 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 FKBP1AP4-201ENST00000631775 336 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 AL662907.2-201ENST00000624339 3448 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 FRMD6-201ENST00000344768 2972 ntTSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 HOXA1-201ENST00000343060 2517 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 TBC1D14-202ENST00000410031 4201 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 ACSL5-205ENST00000433418 3281 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 FBN2-204ENST00000508053 11132 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 DZIP1-202ENST00000361156 7011 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 CDHR3-211ENST00000478080 2633 ntAPPRIS ALT2 TSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 NCOA1-204ENST00000405141 7405 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 TENM2-205ENST00000519204 9427 ntTSL 5 BASIC8.46□□□□□ -1.05
COL9A1P20849 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC8.46□□□□□ -1.05
COL9A1P20849 AL031118.1-201ENST00000607727 2955 ntBASIC8.46□□□□□ -1.05
COL9A1P20849 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC8.46□□□□□ -1.05
COL9A1P20849 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC8.46□□□□□ -1.05
COL9A1P20849 AC097662.1-204ENST00000396588 2214 ntTSL 2 BASIC8.46□□□□□ -1.05
COL9A1P20849 COL21A1-201ENST00000244728 4339 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.05
COL9A1P20849 NUMB-205ENST00000544991 2757 ntTSL 5 BASIC8.46□□□□□ -1.05
COL9A1P20849 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC8.46□□□□□ -1.05
COL9A1P20849 AL157831.2-201ENST00000564681 3095 ntBASIC8.46□□□□□ -1.05
COL9A1P20849 AMER1-201ENST00000330258 8443 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
COL9A1P20849 INSIG2-201ENST00000245787 2590 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
COL9A1P20849 BCL9P1-201ENST00000506012 2561 ntBASIC8.46□□□□□ -1.05
COL9A1P20849 PLCXD2-205ENST00000636933 7710 ntAPPRIS P1 TSL 5 BASIC8.46□□□□□ -1.05
COL9A1P20849 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC8.46□□□□□ -1.05
COL9A1P20849 SLC16A1-AS1-204ENST00000428411 8757 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 APEX2-201ENST00000374987 3245 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 RNU6-1339P-201ENST00000363574 91 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 Y_RNA.159-201ENST00000363674 87 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC8.46□□□□□ -1.06
COL9A1P20849 DEFB109C-201ENST00000382575 264 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 DEFB109B-201ENST00000382656 264 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 SNORA32.2-201ENST00000384049 122 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 RNU6-809P-201ENST00000384461 107 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 SNORD86-201ENST00000391196 86 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC087752.1-201ENST00000391360 558 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 TRIB2-203ENST00000405331 830 ntTSL 2 BASIC8.46□□□□□ -1.06
COL9A1P20849 AL450338.1-201ENST00000407987 512 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 SNORD3J-201ENST00000408473 190 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 LINC00676-201ENST00000416090 474 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 RPL34P27-201ENST00000428810 349 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 RPL31P35-201ENST00000431058 377 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 RPL21P88-201ENST00000436649 436 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC015983.1-201ENST00000441577 373 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AL357127.1-201ENST00000451295 438 ntTSL 3 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC092570.2-201ENST00000452117 1143 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 APOBEC3AP1-201ENST00000511396 287 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC008581.1-201ENST00000512650 385 ntTSL 3 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 NTAN1P2-201ENST00000515730 940 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC087521.3-201ENST00000528226 553 ntTSL 4 BASIC8.46□□□□□ -1.06
COL9A1P20849 NUTF2P2-201ENST00000551207 384 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC063950.1-201ENST00000552036 308 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC079075.1-201ENST00000559543 878 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC127029.1-201ENST00000560822 237 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC018558.5-201ENST00000565840 952 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 AC141257.3-201ENST00000572906 215 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 IGLJCOR18-201ENST00000584002 424 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 CYP2C61P-201ENST00000604072 290 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 AC012603.1-201ENST00000606424 528 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 U2.22-201ENST00000636441 106 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 MKKS-204ENST00000639674 192 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 TRERF1-201ENST00000340840 4174 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC8.46□□□□□ -1.06
COL9A1P20849 DCLRE1C-203ENST00000378242 1933 ntTSL 2 BASIC8.46□□□□□ -1.06
COL9A1P20849 SYNE1-230ENST00000495090 1907 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 EEF1A1P5-201ENST00000436459 1389 ntBASIC8.46□□□□□ -1.06
COL9A1P20849 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
COL9A1P20849 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 SP110-215ENST00000540870 2032 ntTSL 2 BASIC8.46□□□□□ -1.06
COL9A1P20849 LINC01630-201ENST00000435144 5489 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 MAPK10-202ENST00000359221 2668 ntTSL 5 BASIC8.46□□□□□ -1.06
COL9A1P20849 WNK1-220ENST00000574564 1401 ntBASIC8.46□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms