Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 CCNT2P1-201ENST00000423082 1315 ntBASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC7.45□□□□□ -1.22
CHMP4CQ96CF2 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CAP1P2-201ENST00000417455 1409 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZNF101P1-201ENST00000435701 1720 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CNOT6LP1-201ENST00000559681 1462 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 BIN2P1-201ENST00000504996 1530 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 PKIB-203ENST00000368446 556 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 SNORA77.2-201ENST00000408571 112 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 RAB9AP4-201ENST00000415230 609 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 RPL21P50-201ENST00000417698 477 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 NPM1P26-201ENST00000426339 738 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL354707.3-201ENST00000427308 331 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC112492.2-201ENST00000432774 1030 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC094019.1-201ENST00000434678 472 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 RAB9AP5-201ENST00000437794 597 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AMYP1-201ENST00000440059 1023 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 RAB9AP2-201ENST00000443911 597 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 TXNP2-201ENST00000443918 295 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 POU5F1P5-201ENST00000445059 658 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 MORF4-201ENST00000447135 971 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CTSLP6-201ENST00000458273 1002 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 RN7SL362P-201ENST00000494228 267 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC122718.2-201ENST00000505325 591 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 GTF2IP11-201ENST00000526931 420 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 OR4R2P-201ENST00000530815 597 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL845552.1-201ENST00000556820 323 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 OR4H6P-201ENST00000563771 921 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 SMIM12P1-201ENST00000603004 274 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC124916.2-201ENST00000604416 224 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL359742.1-201ENST00000622497 540 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC021766.1-201ENST00000624404 741 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 CASC19-274ENST00000642018 970 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AC068769.1-201ENST00000474767 2426 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL132656.3-201ENST00000606384 1595 ntBASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CHMP4CQ96CF2 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 RNA5SP110-201ENST00000362638 115 ntBASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 MIR433-201ENST00000384837 93 ntBASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 ZNF736P11Y-201ENST00000442535 1213 ntBASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 ZNF736P12Y-201ENST00000443152 1243 ntBASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 HCG14-201ENST00000444986 413 ntTSL 2 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 AC093166.3-201ENST00000448785 303 ntBASIC7.43□□□□□ -1.22
CHMP4CQ96CF2 ZNF736P4Y-201ENST00000454995 1243 ntBASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms