Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
MSH3P20585 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 CXADRP1-201ENST00000398098 1095 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AL121977.1-201ENST00000401636 979 ntBASIC5.97□□□□□ -1.45
MSH3P20585 RN7SKP166-201ENST00000410812 305 ntBASIC5.97□□□□□ -1.45
MSH3P20585 NFYAP1-201ENST00000431953 972 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 AL731534.1-201ENST00000434711 269 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 PPIAP27-201ENST00000453800 265 ntBASIC5.97□□□□□ -1.45
MSH3P20585 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 CCDC11P1-201ENST00000503137 1162 ntBASIC5.97□□□□□ -1.45
MSH3P20585 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
MSH3P20585 IGKV3D-25-201ENST00000519599 235 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 AL049779.3-201ENST00000557141 606 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 AP001267.4-201ENST00000602598 545 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.97□□□□□ -1.45
MSH3P20585 AL118556.2-201ENST00000614375 824 ntBASIC5.97□□□□□ -1.45
MSH3P20585 CXADRP3-202ENST00000617265 1100 ntBASIC5.97□□□□□ -1.45
MSH3P20585 AL357562.1-201ENST00000624911 609 ntBASIC5.97□□□□□ -1.45
MSH3P20585 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 AP001153.1-201ENST00000641024 338 ntBASIC5.97□□□□□ -1.45
MSH3P20585 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 GNL2P1-201ENST00000451274 2190 ntBASIC5.97□□□□□ -1.45
MSH3P20585 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSH3P20585 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.97□□□□□ -1.45
MSH3P20585 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.97□□□□□ -1.45
MSH3P20585 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
MSH3P20585 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSH3P20585 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
MSH3P20585 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSH3P20585 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
MSH3P20585 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.96□□□□□ -1.46
MSH3P20585 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSH3P20585 RNA5SP433-201ENST00000364491 114 ntBASIC5.96□□□□□ -1.46
MSH3P20585 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSH3P20585 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.96□□□□□ -1.46
MSH3P20585 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.96□□□□□ -1.46
MSH3P20585 NMD3P2-201ENST00000421815 761 ntBASIC5.96□□□□□ -1.46
MSH3P20585 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.96□□□□□ -1.46
MSH3P20585 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.96□□□□□ -1.46
MSH3P20585 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.96□□□□□ -1.46
MSH3P20585 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 SNORA48.9-201ENST00000516419 162 ntBASIC5.96□□□□□ -1.46
MSH3P20585 AC021733.2-201ENST00000518830 497 ntBASIC5.96□□□□□ -1.46
MSH3P20585 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.96□□□□□ -1.46
MSH3P20585 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 TOMM20P1-201ENST00000534518 427 ntBASIC5.96□□□□□ -1.46
MSH3P20585 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.96□□□□□ -1.46
MSH3P20585 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.96□□□□□ -1.46
MSH3P20585 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 AC119403.2-201ENST00000590960 598 ntBASIC5.96□□□□□ -1.46
MSH3P20585 MIR6071-201ENST00000616741 78 ntBASIC5.96□□□□□ -1.46
MSH3P20585 AC096708.4-201ENST00000620563 552 ntBASIC5.96□□□□□ -1.46
MSH3P20585 AC025262.3-201ENST00000623666 360 ntBASIC5.96□□□□□ -1.46
MSH3P20585 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 CASC19-238ENST00000641523 1558 ntBASIC5.96□□□□□ -1.46
MSH3P20585 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
MSH3P20585 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
MSH3P20585 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.96□□□□□ -1.46
MSH3P20585 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
MSH3P20585 AC004656.1-201ENST00000568479 4951 ntBASIC5.96□□□□□ -1.46
MSH3P20585 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
MSH3P20585 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.96□□□□□ -1.46
MSH3P20585 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSH3P20585 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.95□□□□□ -1.46
MSH3P20585 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms