Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CLDN16-201ENST00000264734 3273 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
VPS9D1Q9Y2B5 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC8.44□□□□□ -1.06
VPS9D1Q9Y2B5 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC8.44□□□□□ -1.06
VPS9D1Q9Y2B5 CASC19-243ENST00000641588 1546 ntBASIC8.44□□□□□ -1.06
VPS9D1Q9Y2B5 SOCS5P5-201ENST00000402732 1586 ntBASIC8.44□□□□□ -1.06
VPS9D1Q9Y2B5 LANCL1-201ENST00000233714 1647 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 GJB2-201ENST00000382844 2309 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL135818.1-202ENST00000554096 1740 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL136140.2-201ENST00000624717 1705 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC009044.1-201ENST00000624577 1798 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 CCDC190-203ENST00000367912 2605 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RNF214-204ENST00000530849 2846 ntTSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LINC01180-201ENST00000589259 2025 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 GDNF-AS1-203ENST00000514532 2913 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL078621.1-201ENST00000272567 768 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 S100A4-201ENST00000354332 566 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 Y_RNA.381-201ENST00000365666 102 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL109755.1-201ENST00000401791 649 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RPL21P107-201ENST00000411449 460 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 HMGB3P2-201ENST00000411913 584 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 SPA17P1-201ENST00000416656 452 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RBM6-203ENST00000421682 684 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC011747.1-201ENST00000425678 565 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LSM3P3-201ENST00000436601 306 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC244102.1-201ENST00000437309 848 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RAB9AP5-201ENST00000437794 597 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 SKP1P1-201ENST00000438081 489 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 TISP43-205ENST00000440359 543 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RAB9AP2-201ENST00000443911 597 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC104772.1-201ENST00000444764 862 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC104843.1-201ENST00000451203 319 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LINC00894-207ENST00000452864 750 ntTSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RN7SL305P-201ENST00000464862 281 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC068587.1-201ENST00000483613 781 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RPS10P16-201ENST00000483812 496 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RPL17P2-201ENST00000491913 451 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC093303.1-201ENST00000514549 295 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL158819.1-201ENST00000514681 398 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-1314P-201ENST00000517139 104 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 MTND6P25-201ENST00000528711 516 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 PTP4A1P6-201ENST00000531034 478 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC024405.1-201ENST00000532521 1042 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 OR4C7P-201ENST00000533375 919 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 TMEM132D-AS1-206ENST00000541320 440 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LINC02373-201ENST00000549261 423 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ACTN1-AS1-201ENST00000553944 484 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL109766.1-201ENST00000555080 552 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AL357153.2-201ENST00000556646 565 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 HNRNPC-227ENST00000556897 1252 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC140658.1-201ENST00000563019 346 ntTSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 TP53TG3HP-201ENST00000563487 346 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LINC01834-201ENST00000567374 385 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ARGFXP2-201ENST00000579304 949 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 BMS1P7-201ENST00000602440 1052 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC068790.5-201ENST00000602741 355 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC093458.1-201ENST00000608912 222 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC078938.1-201ENST00000620993 318 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC006840.1-201ENST00000623069 542 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 UQCRC2-213ENST00000630839 535 ntTSL 4 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC002540.1-201ENST00000625023 1349 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 THAP12P6-201ENST00000431978 2310 ntBASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC044810.2-202ENST00000527847 2503 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 NPSR1-202ENST00000360581 1567 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ZKSCAN3-202ENST00000341464 1794 ntTSL 2 BASIC8.43□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms