RNA–Protein interactions for RNA: ENST00000411913.1

HMGB3P2-201, Transcript of high mobility group box 3 pseudogene 2, humanhuman

BASIC

Gene HMGB3P2, Length 584 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P2-201ENST00000411913 AEBP2Q6ZN18 517 aaPredicted RBP20.54■□□□□ 0.88
HMGB3P2-201ENST00000411913 CHIC1Q5VXU3 224 aa19.35■□□□□ 0.69
HMGB3P2-201ENST00000411913 SENP3Q9H4L4 574 aaPredicted RBP17.61■□□□□ 0.41
HMGB3P2-201ENST00000411913 PHF23Q9BUL5 403 aaPredicted RBP17.35■□□□□ 0.37
HMGB3P2-201ENST00000411913 FOXD1Q16676 465 aa16.4■□□□□ 0.22
HMGB3P2-201ENST00000411913 MSH5O43196 834 aa15.46■□□□□ 0.07
HMGB3P2-201ENST00000411913 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
HMGB3P2-201ENST00000411913 POTEDQ86YR6 584 aa15.37■□□□□ 0.05
HMGB3P2-201ENST00000411913 PIAS4Q8N2W9 510 aaPredicted RBP15.32■□□□□ 0.04
HMGB3P2-201ENST00000411913 PPP6R1Q9UPN7 881 aa15.18■□□□□ 0.02
HMGB3P2-201ENST00000411913 ADRA2BP18089 450 aa15.16■□□□□ 0.02
HMGB3P2-201ENST00000411913 MAPK8IP2Q13387 824 aaPredicted RBP13.98□□□□□ -0.17
HMGB3P2-201ENST00000411913 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
HMGB3P2-201ENST00000411913 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
HMGB3P2-201ENST00000411913 PPP4R3CPQ6ZMV5 832 aa13.48□□□□□ -0.25
HMGB3P2-201ENST00000411913 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
HMGB3P2-201ENST00000411913 CACNB1Q02641 598 aaPredicted RBP13.41□□□□□ -0.26
HMGB3P2-201ENST00000411913 HOXD11P31277 338 aaPredicted RBP13.31□□□□□ -0.28
HMGB3P2-201ENST00000411913 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
HMGB3P2-201ENST00000411913 RNF216Q9NWF9 866 aaPredicted RBP13.19□□□□□ -0.3
HMGB3P2-201ENST00000411913 RNF39Q9H2S5 420 aa13.13□□□□□ -0.31
HMGB3P2-201ENST00000411913 C1QBPQ07021 282 aaKnown RBP12.97□□□□□ -0.33
HMGB3P2-201ENST00000411913 NCBP3Q53F19 620 aaKnown RBP12.96□□□□□ -0.33
HMGB3P2-201ENST00000411913 DNAJC5BQ9UF47 199 aa12.87□□□□□ -0.35
HMGB3P2-201ENST00000411913 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.77□□□□□ -0.37
HMGB3P2-201ENST00000411913 NPM3O75607 178 aaKnown RBP12.7□□□□□ -0.38
HMGB3P2-201ENST00000411913 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
HMGB3P2-201ENST00000411913 CAPN15O75808 1086 aa12.35□□□□□ -0.43
HMGB3P2-201ENST00000411913 KCNA4P22459 653 aa12.31□□□□□ -0.44
HMGB3P2-201ENST00000411913 SPINK5Q9NQ38 1064 aaPredicted RBP12.3□□□□□ -0.44
HMGB3P2-201ENST00000411913 DSG3P32926 999 aa12.25□□□□□ -0.45
HMGB3P2-201ENST00000411913 SLC4A2P04920 1241 aa12.16□□□□□ -0.46
HMGB3P2-201ENST00000411913 APLP2Q06481 763 aa12.12□□□□□ -0.47
HMGB3P2-201ENST00000411913 TRHP20396 242 aaPredicted RBP12.11□□□□□ -0.47
HMGB3P2-201ENST00000411913 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.05□□□□□ -0.48
HMGB3P2-201ENST00000411913 HNRNPUL2Q1KMD3 747 aaKnown RBP12.05□□□□□ -0.48
HMGB3P2-201ENST00000411913 ZNF219Q9P2Y4 722 aaPredicted RBP12.05□□□□□ -0.48
HMGB3P2-201ENST00000411913 ABCB7O75027 752 aa12.02□□□□□ -0.49
HMGB3P2-201ENST00000411913 POTEHQ6S545 545 aa12.02□□□□□ -0.49
HMGB3P2-201ENST00000411913 SAMD1Q6SPF0 538 aaPredicted RBP11.96□□□□□ -0.49
HMGB3P2-201ENST00000411913 MYCNP04198 464 aaPredicted RBP11.78□□□□□ -0.52
HMGB3P2-201ENST00000411913 RBM42Q9BTD8 480 aaKnown RBP11.74□□□□□ -0.53
HMGB3P2-201ENST00000411913 POLA2Q14181 598 aa11.71□□□□□ -0.53
HMGB3P2-201ENST00000411913 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
HMGB3P2-201ENST00000411913 FOXD4L1Q9NU39 408 aa11.55□□□□□ -0.56
HMGB3P2-201ENST00000411913 CHRDL2Q6WN34 429 aa11.54□□□□□ -0.56
HMGB3P2-201ENST00000411913 ATF5Q9Y2D1 282 aaPredicted RBP11.48□□□□□ -0.57
HMGB3P2-201ENST00000411913 ZBTB12Q9Y330 459 aaPredicted RBP11.46□□□□□ -0.57
HMGB3P2-201ENST00000411913 AKT1S1Q96B36 256 aa11.41□□□□□ -0.58
HMGB3P2-201ENST00000411913 OSCARQ8IYS5 282 aa11.33□□□□□ -0.6
HMGB3P2-201ENST00000411913 REM2Q8IYK8 340 aaPredicted RBP11.3□□□□□ -0.6
HMGB3P2-201ENST00000411913 ZBTB22O15209 634 aa11.27□□□□□ -0.61
HMGB3P2-201ENST00000411913 ATXN8OSP0DMR3 200 aa11.2□□□□□ -0.62
HMGB3P2-201ENST00000411913 PIP4P2Q8N4L2 257 aa11.2□□□□□ -0.62
HMGB3P2-201ENST00000411913 SP7Q8TDD2 431 aaPredicted RBP11.18□□□□□ -0.62
HMGB3P2-201ENST00000411913 PITPNM1O00562 1244 aa11.17□□□□□ -0.62
HMGB3P2-201ENST00000411913 FBLN2P98095 1184 aa11.14□□□□□ -0.63
HMGB3P2-201ENST00000411913 HAX1O00165 279 aa11.12□□□□□ -0.63
HMGB3P2-201ENST00000411913 FXR2P51116 673 aaKnown RBP eCLIP11.09□□□□□ -0.63
HMGB3P2-201ENST00000411913 SPDYE2BA6NHP3 402 aa11.08□□□□□ -0.64
HMGB3P2-201ENST00000411913 SPDYE6P0CI01 402 aa11.08□□□□□ -0.64
HMGB3P2-201ENST00000411913 SPDYE2Q495Y8 402 aa11.08□□□□□ -0.64
HMGB3P2-201ENST00000411913 CLEC11AQ9Y240 323 aa10.98□□□□□ -0.65
HMGB3P2-201ENST00000411913 SPDYE1Q8NFV5 336 aaPredicted RBP10.95□□□□□ -0.66
HMGB3P2-201ENST00000411913 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
HMGB3P2-201ENST00000411913 MKRN4PQ13434 485 aaPredicted RBP10.94□□□□□ -0.66
HMGB3P2-201ENST00000411913 PRKAR2AP13861 404 aaKnown RBP10.91□□□□□ -0.66
HMGB3P2-201ENST00000411913 EVX2Q03828 476 aa10.88□□□□□ -0.67
HMGB3P2-201ENST00000411913 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
HMGB3P2-201ENST00000411913 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.69
HMGB3P2-201ENST00000411913 PRR29P0C7W0 189 aa10.76□□□□□ -0.69
HMGB3P2-201ENST00000411913 C19orf67A6NJJ6 358 aa10.75□□□□□ -0.69
HMGB3P2-201ENST00000411913 CHADLQ6NUI6 762 aa10.75□□□□□ -0.69
HMGB3P2-201ENST00000411913 GABBR2O75899 941 aa10.66□□□□□ -0.7
HMGB3P2-201ENST00000411913 CSRNP3Q8WYN3 585 aa10.61□□□□□ -0.71
HMGB3P2-201ENST00000411913 CD44P16070 742 aaKnown RBP10.56□□□□□ -0.72
HMGB3P2-201ENST00000411913 FARP1Q9Y4F1 1045 aaPredicted RBP10.56□□□□□ -0.72
HMGB3P2-201ENST00000411913 LHX8Q68G74 356 aa10.51□□□□□ -0.73
HMGB3P2-201ENST00000411913 EHMT2Q96KQ7 1210 aa10.45□□□□□ -0.74
HMGB3P2-201ENST00000411913 STAG3Q9UJ98 1225 aa10.45□□□□□ -0.74
HMGB3P2-201ENST00000411913 CLCN6P51797 869 aa10.44□□□□□ -0.74
HMGB3P2-201ENST00000411913 SPDYE4A6NLX3 237 aa10.39□□□□□ -0.75
HMGB3P2-201ENST00000411913 POTEIP0CG38 1075 aa10.39□□□□□ -0.75
HMGB3P2-201ENST00000411913 DCBLD2Q96PD2 775 aa10.39□□□□□ -0.75
HMGB3P2-201ENST00000411913 ZRANB1Q9UGI0 708 aa10.39□□□□□ -0.75
HMGB3P2-201ENST00000411913 CREBZFQ9NS37 354 aa10.38□□□□□ -0.75
HMGB3P2-201ENST00000411913 ZNF579Q8NAF0 562 aaKnown RBP10.35□□□□□ -0.75
HMGB3P2-201ENST00000411913 PAK3O75914 559 aaPredicted RBP10.31□□□□□ -0.76
HMGB3P2-201ENST00000411913 NPM1P06748 294 aaKnown RBP eCLIP10.25□□□□□ -0.77
HMGB3P2-201ENST00000411913 GALR2O43603 387 aaPredicted RBP10.24□□□□□ -0.77
HMGB3P2-201ENST00000411913 PHF12Q96QT6 1004 aa10.21□□□□□ -0.77
HMGB3P2-201ENST00000411913 MNX1P50219 401 aaPredicted RBP10.15□□□□□ -0.78
HMGB3P2-201ENST00000411913 OTUD5Q96G74 571 aa10.07□□□□□ -0.8
HMGB3P2-201ENST00000411913 MS4A3Q96HJ5 214 aa10.06□□□□□ -0.8
HMGB3P2-201ENST00000411913 TSPYL2Q9H2G4 693 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P2-201ENST00000411913 PELP1Q8IZL8 1130 aaKnown RBP10.05□□□□□ -0.8
HMGB3P2-201ENST00000411913 POTEB2H3BUK9 544 aa10.04□□□□□ -0.8
HMGB3P2-201ENST00000411913 PLSCR2Q9NRY7 297 aa10.04□□□□□ -0.8
HMGB3P2-201ENST00000411913 PROM2Q8N271 834 aa10.02□□□□□ -0.81
HMGB3P2-201ENST00000411913 PLEKHG5O94827 1062 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms