Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC090835.1-201ENST00000515189 1024 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 RNU6-1046P-201ENST00000516538 107 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 OR5AQ1P-201ENST00000527596 927 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 EGLN3P1-201ENST00000541727 720 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 AC090607.2-201ENST00000560331 695 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 AC006967.3-201ENST00000594086 1093 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 AC005332.6-201ENST00000613178 446 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 AL391903.2-201ENST00000614532 247 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 HMGB1P24-202ENST00000615653 685 ntBASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 HEATR4-202ENST00000553558 3523 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
NPAS3Q8IXF0 MAPK10-290ENST00000641237 2826 ntBASIC7.9□□□□□ -1.15
NPAS3Q8IXF0 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
NPAS3Q8IXF0 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.15
NPAS3Q8IXF0 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
NPAS3Q8IXF0 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL445235.1-201ENST00000431202 1747 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 NF1P2-201ENST00000556855 2505 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC125232.1-201ENST00000452554 1408 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 U3.14-201ENST00000365363 227 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 Y_RNA.402-201ENST00000383972 102 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RNU6-196P-201ENST00000384315 107 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RPS3AP23-201ENST00000401762 784 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 ATF1P1-201ENST00000406040 927 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MRPL32P1-201ENST00000406301 247 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RN7SKP225-201ENST00000410405 352 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RN7SKP261-201ENST00000410948 278 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RPS7P13-201ENST00000413955 498 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MICG-208ENST00000416822 132 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 FTOP1-201ENST00000419363 861 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC009237.2-201ENST00000421358 284 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL009174.1-201ENST00000426577 416 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL392003.1-201ENST00000434394 243 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RPL14P5-201ENST00000436474 730 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 TXNP2-201ENST00000443918 295 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC073476.1-201ENST00000452854 407 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC019080.2-201ENST00000453859 394 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RN7SL791P-201ENST00000467868 295 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RN7SL233P-201ENST00000469988 277 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 RPS3AP49-201ENST00000472161 790 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC008629.3-201ENST00000505786 586 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 SMARCE1P4-201ENST00000523647 241 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 NACA-211ENST00000548563 827 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC078814.3-201ENST00000553036 491 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC116348.2-201ENST00000563751 577 ntTSL 4 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 FAM60CP-201ENST00000591086 664 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 SIGLEC31P-201ENST00000594237 551 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL161931.1-201ENST00000612768 246 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AL078596.1-201ENST00000624856 447 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 METAP1-212ENST00000625963 147 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 LINC01234-202ENST00000547963 2088 ntTSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 AC009108.3-201ENST00000602739 3515 ntBASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MAP3K7CL-203ENST00000341618 1855 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC7.89□□□□□ -1.15
NPAS3Q8IXF0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms