Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.13□□□□□ -1.27
COL5A3P25940 RPL23AP18-201ENST00000416139 468 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 RPS26P13-201ENST00000419030 330 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 RPA2P2-201ENST00000419698 796 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 RN7SL97P-201ENST00000486780 299 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 AC108043.1-201ENST00000512696 574 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.13□□□□□ -1.27
COL5A3P25940 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 MFSD8-216ENST00000641147 4009 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL5A3P25940 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
COL5A3P25940 GNAS-202ENST00000306090 477 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL5A3P25940 RPL7P45-201ENST00000455851 743 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 AC108161.1-201ENST00000461060 402 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.13□□□□□ -1.27
COL5A3P25940 AP001922.4-201ENST00000526967 290 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC7.13□□□□□ -1.27
COL5A3P25940 AC067852.5-201ENST00000589299 310 ntBASIC7.13□□□□□ -1.27
COL5A3P25940 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.13□□□□□ -1.27
COL5A3P25940 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL5A3P25940 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.12□□□□□ -1.27
COL5A3P25940 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL5A3P25940 AL590004.4-201ENST00000566733 7060 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
COL5A3P25940 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 HSPA8P18-201ENST00000439846 1928 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.12□□□□□ -1.27
COL5A3P25940 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.12□□□□□ -1.27
COL5A3P25940 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC7.12□□□□□ -1.27
COL5A3P25940 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.12□□□□□ -1.27
COL5A3P25940 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.12□□□□□ -1.27
COL5A3P25940 RNA5SP228-201ENST00000516232 133 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC7.12□□□□□ -1.27
COL5A3P25940 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.12□□□□□ -1.27
COL5A3P25940 AC133644.2-201ENST00000608142 540 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.12□□□□□ -1.27
COL5A3P25940 AC091953.3-201ENST00000623220 236 ntBASIC7.12□□□□□ -1.27
COL5A3P25940 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL5A3P25940 AC006511.3-201ENST00000624929 1783 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 AC092724.1-201ENST00000624623 3397 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 MIR765-201ENST00000390226 114 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 AC007161.1-204ENST00000423039 460 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 DNAJB5P1-201ENST00000454004 806 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 RN7SL447P-201ENST00000494711 245 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.11□□□□□ -1.27
COL5A3P25940 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.11□□□□□ -1.27
COL5A3P25940 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.11□□□□□ -1.27
COL5A3P25940 AC127381.1-201ENST00000555979 939 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC7.11□□□□□ -1.27
COL5A3P25940 MIR6810-201ENST00000622701 70 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.11□□□□□ -1.27
COL5A3P25940 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
COL5A3P25940 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL5A3P25940 AL031651.1-201ENST00000615357 1438 ntBASIC7.11□□□□□ -1.27
COL5A3P25940 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.11□□□□□ -1.27
COL5A3P25940 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms