Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC129915.3-201ENST00000634128 948 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 AC103703.1-201ENST00000634783 663 ntBASIC5.59□□□□□ -1.51
HOXD4P09016 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXD4P09016 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
HOXD4P09016 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXD4P09016 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.59□□□□□ -1.52
HOXD4P09016 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.52
HOXD4P09016 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.59□□□□□ -1.52
HOXD4P09016 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.59□□□□□ -1.52
HOXD4P09016 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXD4P09016 AC105749.1-201ENST00000631338 2008 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 AC005261.6-201ENST00000623072 1387 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 OR7E25P-201ENST00000344844 931 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 RNU1-49P-201ENST00000363468 159 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HOXD4P09016 SUGT1P2-201ENST00000379452 992 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 LYPLA1P3-201ENST00000402650 695 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 RN7SKP229-201ENST00000410465 302 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXD4P09016 AL354868.1-201ENST00000417077 482 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXD4P09016 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXD4P09016 RPL31P15-201ENST00000449770 338 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 RN7SL174P-201ENST00000475578 289 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 AC093719.1-201ENST00000480427 441 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXD4P09016 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXD4P09016 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXD4P09016 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXD4P09016 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXD4P09016 AC000095.2-202ENST00000637415 154 ntBASIC5.58□□□□□ -1.52
HOXD4P09016 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HOXD4P09016 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXD4P09016 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXD4P09016 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL354854.1-201ENST00000455940 1363 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HOXD4P09016 RNU1-134P-201ENST00000362935 165 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL354766.1-201ENST00000423396 542 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL353662.1-201ENST00000439099 327 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 SEPT14P12-201ENST00000442280 560 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 AC092824.1-201ENST00000483524 576 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 NPM1P21-201ENST00000513394 762 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXD4P09016 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 RNA5SP271-201ENST00000516700 88 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AP001858.2-201ENST00000536213 601 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXD4P09016 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXD4P09016 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 TXNP4-201ENST00000575018 310 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 MIR4433B-201ENST00000581329 102 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXD4P09016 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 AP001267.4-201ENST00000602598 545 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AL008723.3-201ENST00000608926 449 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 AC004801.6-201ENST00000616571 978 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms