Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 TFP1-202ENST00000475455 1573 ntBASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 CCR12P-201ENST00000446203 998 ntBASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 SLC25A1P4-201ENST00000567977 778 ntBASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 AL138966.2-201ENST00000621997 464 ntBASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
PCDHGA1Q9Y5H4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 SLC25A1P2-201ENST00000430693 912 ntBASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 AC010653.2-201ENST00000623505 997 ntBASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDHGA1Q9Y5H4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 AL049796.1-201ENST00000565336 1766 ntBASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDHGA1Q9Y5H4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 AC096733.2-201ENST00000609937 1394 ntBASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 INGX-201ENST00000359239 846 ntBASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 AL031133.1-201ENST00000406807 723 ntBASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PCDHGA1Q9Y5H4 RCC2P6-201ENST00000526625 1557 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms